Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21565 and BWI76_RS21570 are separated by 65 nucleotides BWI76_RS21570 and BWI76_RS21575 overlap by 11 nucleotides BWI76_RS21575 and BWI76_RS21580 are separated by 110 nucleotides BWI76_RS21580 and BWI76_RS21590 are separated by 712 nucleotides
BWI76_RS21565: BWI76_RS21565 - outer membrane protein assembly factor BamE, at 4,514,861 to 4,515,202
_RS21565
BWI76_RS21570: BWI76_RS21570 - RnfH family protein, at 4,515,268 to 4,515,558
_RS21570
BWI76_RS21575: BWI76_RS21575 - hypothetical protein, at 4,515,548 to 4,516,024
_RS21575
BWI76_RS21580: BWI76_RS21580 - SsrA-binding protein, at 4,516,135 to 4,516,617
_RS21580
BWI76_RS21590: BWI76_RS21590 - integrase, at 4,517,330 to 4,518,571
_RS21590
Position (kb) 4516
4517 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4515.166 kb on - strand, within BWI76_RS21565 at 4515.280 kb on + strand at 4515.361 kb on - strand at 4515.402 kb on + strand, within BWI76_RS21570 at 4515.489 kb on + strand, within BWI76_RS21570 at 4515.558 kb on + strand at 4515.566 kb on - strand at 4515.566 kb on - strand at 4516.070 kb on - strand at 4516.131 kb on - strand at 4516.288 kb on + strand, within BWI76_RS21580 at 4516.402 kb on + strand, within BWI76_RS21580 at 4516.469 kb on - strand, within BWI76_RS21580 at 4516.891 kb on + strand at 4516.891 kb on + strand at 4517.228 kb on + strand at 4517.228 kb on + strand at 4517.228 kb on + strand at 4517.388 kb on - strand at 4517.418 kb on + strand at 4517.418 kb on + strand at 4517.420 kb on - strand at 4517.426 kb on - strand at 4517.426 kb on - strand at 4517.426 kb on - strand at 4517.426 kb on - strand at 4517.505 kb on + strand, within BWI76_RS21590 at 4517.513 kb on + strand, within BWI76_RS21590 at 4517.531 kb on - strand, within BWI76_RS21590 at 4517.531 kb on - strand, within BWI76_RS21590 at 4517.555 kb on + strand, within BWI76_RS21590 at 4517.556 kb on - strand, within BWI76_RS21590 at 4517.558 kb on - strand, within BWI76_RS21590
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 4,515,166 - BWI76_RS21565 0.89 -0.7 4,515,280 + -0.2 4,515,361 - +1.4 4,515,402 + BWI76_RS21570 0.46 -2.6 4,515,489 + BWI76_RS21570 0.76 -0.5 4,515,558 + +0.8 4,515,566 - +0.0 4,515,566 - -0.2 4,516,070 - -0.8 4,516,131 - -2.6 4,516,288 + BWI76_RS21580 0.32 -1.2 4,516,402 + BWI76_RS21580 0.55 -2.0 4,516,469 - BWI76_RS21580 0.69 -0.2 4,516,891 + +0.8 4,516,891 + -2.8 4,517,228 + +0.5 4,517,228 + +0.4 4,517,228 + +0.4 4,517,388 - -0.2 4,517,418 + -0.3 4,517,418 + -0.5 4,517,420 - +0.6 4,517,426 - +0.8 4,517,426 - -0.8 4,517,426 - +0.1 4,517,426 - +0.5 4,517,505 + BWI76_RS21590 0.14 -0.0 4,517,513 + BWI76_RS21590 0.15 +0.5 4,517,531 - BWI76_RS21590 0.16 -1.2 4,517,531 - BWI76_RS21590 0.16 +0.1 4,517,555 + BWI76_RS21590 0.18 +0.2 4,517,556 - BWI76_RS21590 0.18 -0.3 4,517,558 - BWI76_RS21590 0.18 +1.6
Or see this region's nucleotide sequence