Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21355 and BWI76_RS21360 are separated by 423 nucleotides BWI76_RS21360 and BWI76_RS21365 overlap by 16 nucleotides BWI76_RS21365 and BWI76_RS21370 are separated by 132 nucleotides
BWI76_RS21355: BWI76_RS21355 - RNA polymerase sigma factor RpoE, at 4,470,093 to 4,470,668
_RS21355
BWI76_RS21360: BWI76_RS21360 - L-aspartate oxidase, at 4,471,092 to 4,472,711
_RS21360
BWI76_RS21365: BWI76_RS21365 - tRNA (adenosine(37)-N6)-methyltransferase TrmM, at 4,472,696 to 4,473,436
_RS21365
BWI76_RS21370: BWI76_RS21370 - ATP-dependent RNA helicase SrmB, at 4,473,569 to 4,474,900
_RS21370
Position (kb) 4471
4472
4473 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4470.738 kb on - strand at 4470.757 kb on - strand at 4471.004 kb on - strand at 4471.125 kb on - strand at 4471.130 kb on - strand at 4471.161 kb on + strand at 4471.170 kb on - strand at 4471.206 kb on + strand at 4471.249 kb on - strand at 4471.415 kb on - strand, within BWI76_RS21360 at 4471.440 kb on + strand, within BWI76_RS21360 at 4471.576 kb on + strand, within BWI76_RS21360 at 4471.756 kb on - strand, within BWI76_RS21360 at 4471.817 kb on + strand, within BWI76_RS21360 at 4471.927 kb on - strand, within BWI76_RS21360 at 4472.040 kb on - strand, within BWI76_RS21360 at 4472.224 kb on + strand, within BWI76_RS21360 at 4472.253 kb on + strand, within BWI76_RS21360 at 4472.288 kb on - strand, within BWI76_RS21360 at 4472.578 kb on + strand at 4472.625 kb on + strand at 4472.647 kb on + strand at 4472.655 kb on - strand at 4472.760 kb on - strand at 4473.262 kb on - strand, within BWI76_RS21365 at 4473.297 kb on + strand, within BWI76_RS21365 at 4473.297 kb on + strand, within BWI76_RS21365 at 4473.297 kb on + strand, within BWI76_RS21365 at 4473.305 kb on - strand, within BWI76_RS21365 at 4473.395 kb on + strand at 4473.469 kb on + strand at 4473.476 kb on + strand at 4473.477 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 4,470,738 - -0.3 4,470,757 - +0.0 4,471,004 - -1.1 4,471,125 - -2.6 4,471,130 - -2.8 4,471,161 + -0.7 4,471,170 - -3.3 4,471,206 + -1.8 4,471,249 - -1.8 4,471,415 - BWI76_RS21360 0.20 -2.4 4,471,440 + BWI76_RS21360 0.21 -1.7 4,471,576 + BWI76_RS21360 0.30 -2.5 4,471,756 - BWI76_RS21360 0.41 -2.6 4,471,817 + BWI76_RS21360 0.45 -1.1 4,471,927 - BWI76_RS21360 0.52 -2.3 4,472,040 - BWI76_RS21360 0.59 +0.9 4,472,224 + BWI76_RS21360 0.70 -1.6 4,472,253 + BWI76_RS21360 0.72 -2.0 4,472,288 - BWI76_RS21360 0.74 +0.9 4,472,578 + -1.4 4,472,625 + -3.7 4,472,647 + -2.5 4,472,655 - -1.9 4,472,760 - -1.0 4,473,262 - BWI76_RS21365 0.76 -0.1 4,473,297 + BWI76_RS21365 0.81 +0.3 4,473,297 + BWI76_RS21365 0.81 -0.7 4,473,297 + BWI76_RS21365 0.81 +1.0 4,473,305 - BWI76_RS21365 0.82 +0.1 4,473,395 + +0.2 4,473,469 + -1.1 4,473,476 + +0.1 4,473,477 - +0.4
Or see this region's nucleotide sequence