Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19210 and BWI76_RS19215 are separated by 84 nucleotides BWI76_RS19215 and BWI76_RS19220 overlap by 29 nucleotides BWI76_RS19220 and BWI76_RS19225 are separated by 14 nucleotides BWI76_RS19225 and BWI76_RS19230 are separated by 0 nucleotides
BWI76_RS19210: BWI76_RS19210 - LuxR family transcriptional regulator, at 3,998,342 to 3,999,094
_RS19210
BWI76_RS19215: BWI76_RS19215 - proline-specific peptidase, at 3,999,179 to 4,000,111
_RS19215
BWI76_RS19220: BWI76_RS19220 - hypothetical protein, at 4,000,083 to 4,001,201
_RS19220
BWI76_RS19225: BWI76_RS19225 - AsnC family transcriptional regulator, at 4,001,216 to 4,001,671
_RS19225
BWI76_RS19230: BWI76_RS19230 - polar amino acid ABC transporter inner membrane subunit, at 4,001,672 to 4,002,397
_RS19230
Position (kb) 4000
4001
4002 Strain fitness (log2 ratio) -1
0
1
2 at 3999.134 kb on + strand at 3999.570 kb on - strand, within BWI76_RS19215 at 4000.261 kb on + strand, within BWI76_RS19220 at 4000.475 kb on + strand, within BWI76_RS19220 at 4000.475 kb on + strand, within BWI76_RS19220 at 4000.760 kb on - strand, within BWI76_RS19220 at 4000.969 kb on + strand, within BWI76_RS19220 at 4001.044 kb on + strand, within BWI76_RS19220 at 4001.319 kb on - strand, within BWI76_RS19225 at 4001.345 kb on - strand, within BWI76_RS19225 at 4001.401 kb on + strand, within BWI76_RS19225 at 4001.570 kb on + strand, within BWI76_RS19225 at 4001.596 kb on - strand, within BWI76_RS19225 at 4001.845 kb on - strand at 4001.930 kb on - strand, within BWI76_RS19230
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 3,999,134 + -0.2 3,999,570 - BWI76_RS19215 0.42 -0.2 4,000,261 + BWI76_RS19220 0.16 +2.1 4,000,475 + BWI76_RS19220 0.35 +0.2 4,000,475 + BWI76_RS19220 0.35 +0.1 4,000,760 - BWI76_RS19220 0.61 +1.3 4,000,969 + BWI76_RS19220 0.79 +0.3 4,001,044 + BWI76_RS19220 0.86 -1.1 4,001,319 - BWI76_RS19225 0.23 +0.2 4,001,345 - BWI76_RS19225 0.28 +0.5 4,001,401 + BWI76_RS19225 0.41 -0.6 4,001,570 + BWI76_RS19225 0.78 +0.8 4,001,596 - BWI76_RS19225 0.83 -0.2 4,001,845 - +0.8 4,001,930 - BWI76_RS19230 0.36 +0.1
Or see this region's nucleotide sequence