Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16375

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16370 and BWI76_RS16375 are separated by 10 nucleotidesBWI76_RS16375 and BWI76_RS16380 are separated by 3 nucleotidesBWI76_RS16380 and BWI76_RS16385 are separated by 1 nucleotides BWI76_RS16370: BWI76_RS16370 - electron transport complex subunit D, at 3,396,815 to 3,397,867 _RS16370 BWI76_RS16375: BWI76_RS16375 - electron transport complex subunit G, at 3,397,878 to 3,398,498 _RS16375 BWI76_RS16380: BWI76_RS16380 - electron transport complex subunit RsxE, at 3,398,502 to 3,399,200 _RS16380 BWI76_RS16385: BWI76_RS16385 - endonuclease III, at 3,399,202 to 3,399,837 _RS16385 Position (kb) 3397 3398 3399Strain fitness (log2 ratio) -3 -2 -1 0 1at 3396.996 kb on + strand, within BWI76_RS16370at 3396.996 kb on + strand, within BWI76_RS16370at 3397.308 kb on + strand, within BWI76_RS16370at 3397.364 kb on + strand, within BWI76_RS16370at 3397.622 kb on + strand, within BWI76_RS16370at 3397.991 kb on - strand, within BWI76_RS16375at 3398.080 kb on + strand, within BWI76_RS16375at 3398.406 kb on - strand, within BWI76_RS16375at 3398.447 kb on - strandat 3398.628 kb on - strand, within BWI76_RS16380at 3398.759 kb on + strand, within BWI76_RS16380

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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3,396,996 + BWI76_RS16370 0.17 -0.6
3,396,996 + BWI76_RS16370 0.17 +0.3
3,397,308 + BWI76_RS16370 0.47 -0.7
3,397,364 + BWI76_RS16370 0.52 -0.4
3,397,622 + BWI76_RS16370 0.77 +0.3
3,397,991 - BWI76_RS16375 0.18 -1.1
3,398,080 + BWI76_RS16375 0.33 -3.4
3,398,406 - BWI76_RS16375 0.85 -1.1
3,398,447 - -0.1
3,398,628 - BWI76_RS16380 0.18 +0.9
3,398,759 + BWI76_RS16380 0.37 -0.1

Or see this region's nucleotide sequence