Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15670 and BWI76_RS15675 are separated by 69 nucleotides BWI76_RS15675 and BWI76_RS15680 are separated by 111 nucleotides BWI76_RS15680 and BWI76_RS15685 are separated by 85 nucleotides BWI76_RS15685 and BWI76_RS15690 overlap by 50 nucleotides BWI76_RS15690 and BWI76_RS15695 overlap by 4 nucleotides BWI76_RS15695 and BWI76_RS15700 overlap by 4 nucleotides BWI76_RS15700 and BWI76_RS15705 overlap by 4 nucleotides
BWI76_RS15670: BWI76_RS15670 - hypothetical protein, at 3,274,750 to 3,274,950
_RS15670
BWI76_RS15675: BWI76_RS15675 - hypothetical protein, at 3,275,020 to 3,275,265
_RS15675
BWI76_RS15680: BWI76_RS15680 - hypothetical protein, at 3,275,377 to 3,275,562
_RS15680
BWI76_RS15685: BWI76_RS15685 - hypothetical protein, at 3,275,648 to 3,275,839
_RS15685
BWI76_RS15690: BWI76_RS15690 - hypothetical protein, at 3,275,790 to 3,276,065
_RS15690
BWI76_RS15695: BWI76_RS15695 - hypothetical protein, at 3,276,062 to 3,276,406
_RS15695
BWI76_RS15700: BWI76_RS15700 - hypothetical protein, at 3,276,403 to 3,276,945
_RS15700
BWI76_RS15705: BWI76_RS15705 - putative holin protein, at 3,276,942 to 3,277,253
_RS15705
Position (kb)
3275
3276
3277 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3274.867 kb on - strand, within BWI76_RS15670 at 3274.872 kb on + strand, within BWI76_RS15670 at 3274.872 kb on + strand, within BWI76_RS15670 at 3274.894 kb on - strand, within BWI76_RS15670 at 3275.005 kb on + strand at 3275.008 kb on - strand at 3275.165 kb on + strand, within BWI76_RS15675 at 3275.186 kb on + strand, within BWI76_RS15675 at 3275.194 kb on - strand, within BWI76_RS15675 at 3275.194 kb on - strand, within BWI76_RS15675 at 3275.194 kb on - strand, within BWI76_RS15675 at 3275.221 kb on - strand, within BWI76_RS15675 at 3275.221 kb on - strand, within BWI76_RS15675 at 3275.278 kb on + strand at 3275.322 kb on - strand at 3275.491 kb on + strand, within BWI76_RS15680 at 3275.514 kb on - strand, within BWI76_RS15680 at 3275.533 kb on + strand, within BWI76_RS15680 at 3275.611 kb on + strand at 3275.619 kb on - strand at 3275.676 kb on - strand, within BWI76_RS15685 at 3275.808 kb on + strand at 3275.959 kb on + strand, within BWI76_RS15690 at 3276.178 kb on + strand, within BWI76_RS15695 at 3276.218 kb on - strand, within BWI76_RS15695 at 3276.253 kb on - strand at 3276.255 kb on - strand, within BWI76_RS15695 at 3276.538 kb on - strand, within BWI76_RS15700 at 3276.543 kb on - strand, within BWI76_RS15700 at 3276.606 kb on - strand, within BWI76_RS15700 at 3276.636 kb on + strand, within BWI76_RS15700 at 3276.659 kb on + strand, within BWI76_RS15700 at 3276.826 kb on - strand, within BWI76_RS15700 at 3276.971 kb on + strand at 3276.989 kb on - strand, within BWI76_RS15705 at 3276.999 kb on - strand, within BWI76_RS15705 at 3277.031 kb on - strand, within BWI76_RS15705 at 3277.062 kb on + strand, within BWI76_RS15705
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 3,274,867 - BWI76_RS15670 0.58 +0.0 3,274,872 + BWI76_RS15670 0.61 -1.0 3,274,872 + BWI76_RS15670 0.61 -1.3 3,274,894 - BWI76_RS15670 0.72 -0.7 3,275,005 + +0.5 3,275,008 - -0.1 3,275,165 + BWI76_RS15675 0.59 -0.5 3,275,186 + BWI76_RS15675 0.67 -0.5 3,275,194 - BWI76_RS15675 0.71 -1.2 3,275,194 - BWI76_RS15675 0.71 +0.1 3,275,194 - BWI76_RS15675 0.71 +0.8 3,275,221 - BWI76_RS15675 0.82 -0.5 3,275,221 - BWI76_RS15675 0.82 +0.6 3,275,278 + -1.0 3,275,322 - +1.1 3,275,491 + BWI76_RS15680 0.61 +0.3 3,275,514 - BWI76_RS15680 0.74 -2.0 3,275,533 + BWI76_RS15680 0.84 -1.1 3,275,611 + -0.5 3,275,619 - -1.9 3,275,676 - BWI76_RS15685 0.15 -0.6 3,275,808 + -0.5 3,275,959 + BWI76_RS15690 0.61 -1.4 3,276,178 + BWI76_RS15695 0.34 -0.8 3,276,218 - BWI76_RS15695 0.45 -0.4 3,276,253 - +1.1 3,276,255 - BWI76_RS15695 0.56 -0.4 3,276,538 - BWI76_RS15700 0.25 +0.3 3,276,543 - BWI76_RS15700 0.26 -0.9 3,276,606 - BWI76_RS15700 0.37 -1.2 3,276,636 + BWI76_RS15700 0.43 -0.8 3,276,659 + BWI76_RS15700 0.47 -3.1 3,276,826 - BWI76_RS15700 0.78 -0.3 3,276,971 + -1.2 3,276,989 - BWI76_RS15705 0.15 +0.1 3,276,999 - BWI76_RS15705 0.18 -1.2 3,277,031 - BWI76_RS15705 0.29 -0.3 3,277,062 + BWI76_RS15705 0.38 -0.5
Or see this region's nucleotide sequence