Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14925

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14920 and BWI76_RS14925 overlap by 4 nucleotidesBWI76_RS14925 and BWI76_RS14930 are separated by 24 nucleotides BWI76_RS14920: BWI76_RS14920 - ABC transporter permease, at 3,127,403 to 3,128,410 _RS14920 BWI76_RS14925: BWI76_RS14925 - ABC transporter substrate-binding protein, at 3,128,407 to 3,129,363 _RS14925 BWI76_RS14930: BWI76_RS14930 - hypothetical protein, at 3,129,388 to 3,130,197 _RS14930 Position (kb) 3128 3129 3130Strain fitness (log2 ratio) -1 0 1 2 3at 3127.426 kb on + strandat 3127.541 kb on - strand, within BWI76_RS14920at 3127.616 kb on + strand, within BWI76_RS14920at 3127.710 kb on - strand, within BWI76_RS14920at 3127.763 kb on + strand, within BWI76_RS14920at 3127.771 kb on - strand, within BWI76_RS14920at 3127.777 kb on - strand, within BWI76_RS14920at 3127.856 kb on + strand, within BWI76_RS14920at 3128.045 kb on + strand, within BWI76_RS14920at 3128.169 kb on - strand, within BWI76_RS14920at 3128.190 kb on + strand, within BWI76_RS14920at 3128.233 kb on - strand, within BWI76_RS14920at 3128.385 kb on - strandat 3128.672 kb on - strand, within BWI76_RS14925at 3128.743 kb on + strand, within BWI76_RS14925at 3128.910 kb on - strand, within BWI76_RS14925at 3128.915 kb on - strand, within BWI76_RS14925at 3129.255 kb on + strand, within BWI76_RS14925at 3129.288 kb on - strandat 3129.397 kb on + strandat 3129.607 kb on + strand, within BWI76_RS14930

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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3,127,426 + +1.1
3,127,541 - BWI76_RS14920 0.14 +0.0
3,127,616 + BWI76_RS14920 0.21 +3.4
3,127,710 - BWI76_RS14920 0.30 +0.2
3,127,763 + BWI76_RS14920 0.36 -0.4
3,127,771 - BWI76_RS14920 0.37 +0.0
3,127,777 - BWI76_RS14920 0.37 +0.0
3,127,856 + BWI76_RS14920 0.45 -0.0
3,128,045 + BWI76_RS14920 0.64 +0.6
3,128,169 - BWI76_RS14920 0.76 +0.5
3,128,190 + BWI76_RS14920 0.78 -1.4
3,128,233 - BWI76_RS14920 0.82 -0.0
3,128,385 - +0.5
3,128,672 - BWI76_RS14925 0.28 +0.7
3,128,743 + BWI76_RS14925 0.35 +0.4
3,128,910 - BWI76_RS14925 0.53 +0.6
3,128,915 - BWI76_RS14925 0.53 +0.9
3,129,255 + BWI76_RS14925 0.89 +1.3
3,129,288 - +1.2
3,129,397 + -1.1
3,129,607 + BWI76_RS14930 0.27 +0.5

Or see this region's nucleotide sequence