Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11655

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11645 and BWI76_RS11650 are separated by 9 nucleotidesBWI76_RS11650 and BWI76_RS11655 overlap by 4 nucleotidesBWI76_RS11655 and BWI76_RS11660 overlap by 11 nucleotidesBWI76_RS11660 and BWI76_RS11665 are separated by 191 nucleotides BWI76_RS11645: BWI76_RS11645 - ABC transporter substrate-binding protein, at 2,450,359 to 2,451,519 _RS11645 BWI76_RS11650: BWI76_RS11650 - carboxymuconolactone decarboxylase family protein, at 2,451,529 to 2,452,080 _RS11650 BWI76_RS11655: BWI76_RS11655 - TVP38/TMEM64 family protein, at 2,452,077 to 2,452,775 _RS11655 BWI76_RS11660: BWI76_RS11660 - TVP38/TMEM64 family protein, at 2,452,765 to 2,453,418 _RS11660 BWI76_RS11665: BWI76_RS11665 - exodeoxyribonuclease III, at 2,453,610 to 2,454,416 _RS11665 Position (kb) 2452 2453Strain fitness (log2 ratio) -1 0 1 2at 2452.180 kb on - strand, within BWI76_RS11655at 2452.253 kb on + strand, within BWI76_RS11655at 2452.253 kb on + strand, within BWI76_RS11655at 2452.303 kb on + strand, within BWI76_RS11655at 2452.454 kb on + strand, within BWI76_RS11655at 2452.477 kb on + strand, within BWI76_RS11655at 2452.676 kb on + strand, within BWI76_RS11655at 2452.684 kb on - strand, within BWI76_RS11655at 2452.685 kb on + strand, within BWI76_RS11655at 2452.832 kb on + strand, within BWI76_RS11660at 2452.840 kb on - strand, within BWI76_RS11660at 2452.847 kb on + strand, within BWI76_RS11660at 2452.847 kb on + strand, within BWI76_RS11660at 2452.852 kb on + strand, within BWI76_RS11660at 2452.885 kb on - strand, within BWI76_RS11660at 2452.953 kb on - strand, within BWI76_RS11660at 2452.953 kb on - strand, within BWI76_RS11660at 2453.031 kb on - strand, within BWI76_RS11660at 2453.045 kb on + strand, within BWI76_RS11660at 2453.137 kb on - strand, within BWI76_RS11660at 2453.139 kb on + strand, within BWI76_RS11660at 2453.147 kb on - strand, within BWI76_RS11660at 2453.151 kb on + strand, within BWI76_RS11660at 2453.288 kb on + strand, within BWI76_RS11660at 2453.298 kb on + strand, within BWI76_RS11660at 2453.332 kb on + strand, within BWI76_RS11660at 2453.332 kb on - strand, within BWI76_RS11660at 2453.350 kb on - strand, within BWI76_RS11660at 2453.350 kb on - strand, within BWI76_RS11660at 2453.475 kb on + strandat 2453.488 kb on - strandat 2453.515 kb on + strandat 2453.525 kb on - strandat 2453.535 kb on + strandat 2453.576 kb on - strandat 2453.576 kb on - strandat 2453.607 kb on + strandat 2453.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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2,452,180 - BWI76_RS11655 0.15 +0.9
2,452,253 + BWI76_RS11655 0.25 -0.1
2,452,253 + BWI76_RS11655 0.25 -0.2
2,452,303 + BWI76_RS11655 0.32 -0.1
2,452,454 + BWI76_RS11655 0.54 +0.2
2,452,477 + BWI76_RS11655 0.57 +0.2
2,452,676 + BWI76_RS11655 0.86 +0.8
2,452,684 - BWI76_RS11655 0.87 +1.8
2,452,685 + BWI76_RS11655 0.87 +1.0
2,452,832 + BWI76_RS11660 0.10 +1.4
2,452,840 - BWI76_RS11660 0.11 +1.7
2,452,847 + BWI76_RS11660 0.13 +0.9
2,452,847 + BWI76_RS11660 0.13 +0.4
2,452,852 + BWI76_RS11660 0.13 -0.6
2,452,885 - BWI76_RS11660 0.18 -0.7
2,452,953 - BWI76_RS11660 0.29 +0.9
2,452,953 - BWI76_RS11660 0.29 +0.3
2,453,031 - BWI76_RS11660 0.41 +0.8
2,453,045 + BWI76_RS11660 0.43 -0.5
2,453,137 - BWI76_RS11660 0.57 +1.3
2,453,139 + BWI76_RS11660 0.57 +0.8
2,453,147 - BWI76_RS11660 0.58 +1.3
2,453,151 + BWI76_RS11660 0.59 +0.7
2,453,288 + BWI76_RS11660 0.80 +0.5
2,453,298 + BWI76_RS11660 0.81 +0.5
2,453,332 + BWI76_RS11660 0.87 -0.1
2,453,332 - BWI76_RS11660 0.87 +0.3
2,453,350 - BWI76_RS11660 0.89 -0.2
2,453,350 - BWI76_RS11660 0.89 +0.4
2,453,475 + -1.4
2,453,488 - -0.3
2,453,515 + -0.1
2,453,525 - +0.7
2,453,535 + -1.5
2,453,576 - +0.7
2,453,576 - +0.0
2,453,607 + +0.1
2,453,623 - +1.2

Or see this region's nucleotide sequence