Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07460 and BWI76_RS07465 overlap by 1 nucleotides BWI76_RS07465 and BWI76_RS07470 are separated by 190 nucleotides BWI76_RS07470 and BWI76_RS07475 are separated by 32 nucleotides BWI76_RS07475 and BWI76_RS07480 are separated by 36 nucleotides
BWI76_RS07460: BWI76_RS07460 - hypothetical protein, at 1,574,562 to 1,574,930
_RS07460
BWI76_RS07465: BWI76_RS07465 - TetR family transcriptional regulator, at 1,574,930 to 1,575,511
_RS07465
BWI76_RS07470: BWI76_RS07470 - MBL fold metallo-hydrolase, at 1,575,702 to 1,576,802
_RS07470
BWI76_RS07475: BWI76_RS07475 - DNA-binding transcriptional regulator RamA, at 1,576,835 to 1,577,176
_RS07475
BWI76_RS07480: BWI76_RS07480 - TonB-dependent siderophore receptor, at 1,577,213 to 1,579,357
_RS07480
Position (kb) 1575
1576
1577 Strain fitness (log2 ratio) -2
-1
0
1 at 1574.702 kb on + strand, within BWI76_RS07460 at 1574.900 kb on + strand at 1574.947 kb on - strand at 1575.250 kb on - strand, within BWI76_RS07465 at 1575.306 kb on + strand, within BWI76_RS07465 at 1575.514 kb on - strand at 1575.575 kb on - strand at 1575.835 kb on - strand, within BWI76_RS07470 at 1575.968 kb on + strand, within BWI76_RS07470 at 1576.364 kb on + strand, within BWI76_RS07470 at 1576.519 kb on - strand, within BWI76_RS07470 at 1576.693 kb on + strand at 1576.703 kb on + strand at 1576.801 kb on + strand at 1576.969 kb on + strand, within BWI76_RS07475 at 1577.368 kb on + strand at 1577.598 kb on + strand, within BWI76_RS07480 at 1577.656 kb on - strand, within BWI76_RS07480 at 1577.711 kb on + strand, within BWI76_RS07480 at 1577.711 kb on + strand, within BWI76_RS07480 at 1577.711 kb on + strand, within BWI76_RS07480 at 1577.724 kb on + strand, within BWI76_RS07480 at 1577.724 kb on + strand, within BWI76_RS07480 at 1577.734 kb on + strand, within BWI76_RS07480 at 1577.749 kb on + strand, within BWI76_RS07480
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,574,702 + BWI76_RS07460 0.38 -0.1 1,574,900 + +0.6 1,574,947 - +0.4 1,575,250 - BWI76_RS07465 0.55 -1.7 1,575,306 + BWI76_RS07465 0.65 -0.8 1,575,514 - -0.2 1,575,575 - -0.7 1,575,835 - BWI76_RS07470 0.12 +0.3 1,575,968 + BWI76_RS07470 0.24 -0.4 1,576,364 + BWI76_RS07470 0.60 +1.6 1,576,519 - BWI76_RS07470 0.74 +0.4 1,576,693 + -0.2 1,576,703 + +0.1 1,576,801 + -1.7 1,576,969 + BWI76_RS07475 0.39 +0.4 1,577,368 + -2.4 1,577,598 + BWI76_RS07480 0.18 +0.4 1,577,656 - BWI76_RS07480 0.21 -0.2 1,577,711 + BWI76_RS07480 0.23 -0.5 1,577,711 + BWI76_RS07480 0.23 +0.3 1,577,711 + BWI76_RS07480 0.23 +0.3 1,577,724 + BWI76_RS07480 0.24 -0.3 1,577,724 + BWI76_RS07480 0.24 +0.1 1,577,734 + BWI76_RS07480 0.24 +0.6 1,577,749 + BWI76_RS07480 0.25 +0.1
Or see this region's nucleotide sequence