Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05515 and BWI76_RS05520 are separated by 2 nucleotides BWI76_RS05520 and BWI76_RS05525 are separated by 32 nucleotides BWI76_RS05525 and BWI76_RS05530 are separated by 159 nucleotides
BWI76_RS05515: BWI76_RS05515 - NADH:ubiquinone reductase (Na(+)-transporting) subunit F, at 1,156,452 to 1,157,675
_RS05515
BWI76_RS05520: BWI76_RS05520 - hypothetical protein, at 1,157,678 to 1,157,893
_RS05520
BWI76_RS05525: BWI76_RS05525 - glycerophosphodiester phosphodiesterase, at 1,157,926 to 1,158,783
_RS05525
BWI76_RS05530: BWI76_RS05530 - DNA polymerase IV, at 1,158,943 to 1,159,998
_RS05530
Position (kb) 1157
1158
1159 Strain fitness (log2 ratio) -1
0
1 at 1157.126 kb on - strand, within BWI76_RS05515 at 1157.340 kb on + strand, within BWI76_RS05515 at 1157.773 kb on - strand, within BWI76_RS05520 at 1157.809 kb on + strand, within BWI76_RS05520 at 1157.820 kb on + strand, within BWI76_RS05520 at 1157.820 kb on + strand, within BWI76_RS05520 at 1157.828 kb on - strand, within BWI76_RS05520 at 1158.058 kb on + strand, within BWI76_RS05525 at 1158.058 kb on + strand, within BWI76_RS05525 at 1158.329 kb on - strand, within BWI76_RS05525 at 1158.330 kb on - strand, within BWI76_RS05525 at 1158.542 kb on - strand, within BWI76_RS05525 at 1158.945 kb on + strand at 1158.964 kb on + strand at 1158.964 kb on + strand at 1159.004 kb on + strand at 1159.004 kb on + strand at 1159.004 kb on + strand at 1159.051 kb on - strand, within BWI76_RS05530 at 1159.164 kb on - strand, within BWI76_RS05530 at 1159.410 kb on - strand, within BWI76_RS05530 at 1159.482 kb on + strand, within BWI76_RS05530 at 1159.523 kb on - strand, within BWI76_RS05530 at 1159.528 kb on + strand, within BWI76_RS05530 at 1159.549 kb on + strand, within BWI76_RS05530
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 1,157,126 - BWI76_RS05515 0.55 -1.6 1,157,340 + BWI76_RS05515 0.73 +0.4 1,157,773 - BWI76_RS05520 0.44 +0.1 1,157,809 + BWI76_RS05520 0.61 +0.8 1,157,820 + BWI76_RS05520 0.66 -0.2 1,157,820 + BWI76_RS05520 0.66 -1.5 1,157,828 - BWI76_RS05520 0.69 +0.9 1,158,058 + BWI76_RS05525 0.15 +1.7 1,158,058 + BWI76_RS05525 0.15 +1.1 1,158,329 - BWI76_RS05525 0.47 +0.8 1,158,330 - BWI76_RS05525 0.47 +0.2 1,158,542 - BWI76_RS05525 0.72 -0.2 1,158,945 + +0.3 1,158,964 + +0.1 1,158,964 + +1.1 1,159,004 + -1.2 1,159,004 + +0.2 1,159,004 + +0.5 1,159,051 - BWI76_RS05530 0.10 -0.7 1,159,164 - BWI76_RS05530 0.21 -0.3 1,159,410 - BWI76_RS05530 0.44 -1.4 1,159,482 + BWI76_RS05530 0.51 -0.3 1,159,523 - BWI76_RS05530 0.55 -1.1 1,159,528 + BWI76_RS05530 0.55 -0.1 1,159,549 + BWI76_RS05530 0.57 +0.4
Or see this region's nucleotide sequence