Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04245 and BWI76_RS04250 are separated by 1 nucleotides BWI76_RS04250 and BWI76_RS04255 are separated by 3 nucleotides
BWI76_RS04245: BWI76_RS04245 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 872,525 to 874,987
_RS04245
BWI76_RS04250: BWI76_RS04250 - homoserine kinase, at 874,989 to 875,918
_RS04250
BWI76_RS04255: BWI76_RS04255 - threonine synthase, at 875,922 to 877,202
_RS04255
Position (kb) 874
875
876 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 874.039 kb on + strand, within BWI76_RS04245 at 874.039 kb on + strand, within BWI76_RS04245 at 874.082 kb on - strand, within BWI76_RS04245 at 874.282 kb on + strand, within BWI76_RS04245 at 874.290 kb on + strand, within BWI76_RS04245 at 874.435 kb on - strand, within BWI76_RS04245 at 874.480 kb on - strand, within BWI76_RS04245 at 874.490 kb on - strand, within BWI76_RS04245 at 874.654 kb on - strand, within BWI76_RS04245 at 874.675 kb on - strand, within BWI76_RS04245 at 874.905 kb on + strand at 874.949 kb on + strand at 875.101 kb on - strand, within BWI76_RS04250 at 875.266 kb on + strand, within BWI76_RS04250 at 875.274 kb on - strand, within BWI76_RS04250 at 875.422 kb on - strand, within BWI76_RS04250 at 875.516 kb on - strand, within BWI76_RS04250 at 875.539 kb on - strand at 875.587 kb on + strand, within BWI76_RS04250 at 875.595 kb on - strand, within BWI76_RS04250 at 875.599 kb on + strand, within BWI76_RS04250 at 875.615 kb on - strand, within BWI76_RS04250 at 875.846 kb on - strand at 875.962 kb on + strand at 875.965 kb on - strand at 875.970 kb on - strand at 875.987 kb on - strand at 876.169 kb on - strand, within BWI76_RS04255 at 876.213 kb on - strand, within BWI76_RS04255 at 876.223 kb on + strand, within BWI76_RS04255 at 876.398 kb on + strand, within BWI76_RS04255 at 876.428 kb on + strand, within BWI76_RS04255 at 876.620 kb on + strand, within BWI76_RS04255 at 876.620 kb on + strand, within BWI76_RS04255 at 876.644 kb on + strand, within BWI76_RS04255 at 876.644 kb on + strand, within BWI76_RS04255 at 876.812 kb on + strand, within BWI76_RS04255 at 876.812 kb on + strand, within BWI76_RS04255 at 876.820 kb on - strand, within BWI76_RS04255 at 876.820 kb on - strand, within BWI76_RS04255
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 874,039 + BWI76_RS04245 0.61 -2.9 874,039 + BWI76_RS04245 0.61 -4.4 874,082 - BWI76_RS04245 0.63 -2.6 874,282 + BWI76_RS04245 0.71 -4.1 874,290 + BWI76_RS04245 0.72 -2.6 874,435 - BWI76_RS04245 0.78 -4.0 874,480 - BWI76_RS04245 0.79 -6.1 874,490 - BWI76_RS04245 0.80 -3.3 874,654 - BWI76_RS04245 0.86 -3.1 874,675 - BWI76_RS04245 0.87 -4.6 874,905 + -3.0 874,949 + -1.7 875,101 - BWI76_RS04250 0.12 -3.4 875,266 + BWI76_RS04250 0.30 -3.7 875,274 - BWI76_RS04250 0.31 -5.6 875,422 - BWI76_RS04250 0.47 -5.9 875,516 - BWI76_RS04250 0.57 -4.0 875,539 - +0.8 875,587 + BWI76_RS04250 0.64 -1.8 875,595 - BWI76_RS04250 0.65 -3.2 875,599 + BWI76_RS04250 0.66 -5.7 875,615 - BWI76_RS04250 0.67 -1.5 875,846 - -2.6 875,962 + -4.6 875,965 - -0.2 875,970 - -3.8 875,987 - -3.3 876,169 - BWI76_RS04255 0.19 -3.5 876,213 - BWI76_RS04255 0.23 -3.6 876,223 + BWI76_RS04255 0.23 -6.4 876,398 + BWI76_RS04255 0.37 -2.9 876,428 + BWI76_RS04255 0.40 +0.8 876,620 + BWI76_RS04255 0.54 -4.2 876,620 + BWI76_RS04255 0.54 -2.3 876,644 + BWI76_RS04255 0.56 -2.5 876,644 + BWI76_RS04255 0.56 -0.2 876,812 + BWI76_RS04255 0.69 -5.9 876,812 + BWI76_RS04255 0.69 -6.1 876,820 - BWI76_RS04255 0.70 -1.6 876,820 - BWI76_RS04255 0.70 -2.6
Or see this region's nucleotide sequence