Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03910 and BWI76_RS03915 overlap by 4 nucleotides BWI76_RS03915 and BWI76_RS03920 are separated by 70 nucleotides BWI76_RS03920 and BWI76_RS03925 are separated by 32 nucleotides BWI76_RS03925 and BWI76_RS03930 are separated by 3 nucleotides
BWI76_RS03910: BWI76_RS03910 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 808,575 to 809,177
_RS03910
BWI76_RS03915: BWI76_RS03915 - MurR/RpiR family transcriptional regulator, at 809,174 to 810,037
_RS03915
BWI76_RS03920: BWI76_RS03920 - N-acetyltransferase, at 810,108 to 810,641
_RS03920
BWI76_RS03925: BWI76_RS03925 - N-acetyltransferase GCN5, at 810,674 to 811,510
_RS03925
BWI76_RS03930: BWI76_RS03930 - MFS transporter, at 811,514 to 812,875
_RS03930
Position (kb) 810
811 Strain fitness (log2 ratio) -1
0
1 at 809.235 kb on - strand at 809.333 kb on - strand at 809.380 kb on - strand, within BWI76_RS03915 at 809.384 kb on - strand, within BWI76_RS03915 at 809.484 kb on + strand, within BWI76_RS03915 at 809.656 kb on - strand, within BWI76_RS03915 at 809.718 kb on + strand, within BWI76_RS03915 at 809.768 kb on - strand, within BWI76_RS03915 at 809.998 kb on + strand at 810.120 kb on + strand at 810.158 kb on - strand at 810.197 kb on + strand, within BWI76_RS03920 at 810.349 kb on - strand, within BWI76_RS03920 at 810.421 kb on - strand, within BWI76_RS03920 at 810.649 kb on + strand at 810.669 kb on + strand at 810.687 kb on - strand at 810.723 kb on + strand at 810.810 kb on + strand, within BWI76_RS03925 at 811.013 kb on - strand, within BWI76_RS03925 at 811.067 kb on - strand, within BWI76_RS03925 at 811.141 kb on - strand, within BWI76_RS03925 at 811.142 kb on - strand, within BWI76_RS03925 at 811.274 kb on + strand, within BWI76_RS03925 at 811.557 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 809,235 - +0.1 809,333 - +0.9 809,380 - BWI76_RS03915 0.24 +0.1 809,384 - BWI76_RS03915 0.24 +0.2 809,484 + BWI76_RS03915 0.36 +0.0 809,656 - BWI76_RS03915 0.56 +0.4 809,718 + BWI76_RS03915 0.63 -0.6 809,768 - BWI76_RS03915 0.69 +0.1 809,998 + +0.5 810,120 + +0.2 810,158 - -0.3 810,197 + BWI76_RS03920 0.17 -0.5 810,349 - BWI76_RS03920 0.45 +0.5 810,421 - BWI76_RS03920 0.59 +1.0 810,649 + +1.1 810,669 + +0.4 810,687 - -0.7 810,723 + -0.2 810,810 + BWI76_RS03925 0.16 +0.2 811,013 - BWI76_RS03925 0.41 -1.5 811,067 - BWI76_RS03925 0.47 +0.9 811,141 - BWI76_RS03925 0.56 -1.2 811,142 - BWI76_RS03925 0.56 +0.6 811,274 + BWI76_RS03925 0.72 +0.6 811,557 + +0.9
Or see this region's nucleotide sequence