Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01850

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01845 and BWI76_RS01850 are separated by 107 nucleotidesBWI76_RS01850 and BWI76_RS01855 are separated by 188 nucleotidesBWI76_RS01855 and BWI76_RS01860 are separated by 12 nucleotides BWI76_RS01845: BWI76_RS01845 - maltoporin, at 376,068 to 377,354 _RS01845 BWI76_RS01850: BWI76_RS01850 - maltose operon protein MalM, at 377,462 to 378,394 _RS01850 BWI76_RS01855: BWI76_RS01855 - chorismate lyase, at 378,583 to 379,080 _RS01855 BWI76_RS01860: BWI76_RS01860 - 4-hydroxybenzoate octaprenyltransferase, at 379,093 to 379,962 _RS01860 Position (kb) 377 378 379Strain fitness (log2 ratio) -2 -1 0 1at 376.547 kb on - strand, within BWI76_RS01845at 376.708 kb on + strand, within BWI76_RS01845at 376.708 kb on + strand, within BWI76_RS01845at 376.733 kb on - strand, within BWI76_RS01845at 376.786 kb on + strand, within BWI76_RS01845at 376.932 kb on + strand, within BWI76_RS01845at 377.030 kb on + strand, within BWI76_RS01845at 377.195 kb on - strand, within BWI76_RS01845at 377.487 kb on + strandat 377.608 kb on + strand, within BWI76_RS01850at 377.782 kb on - strand, within BWI76_RS01850at 377.998 kb on + strand, within BWI76_RS01850at 377.998 kb on + strand, within BWI76_RS01850at 377.998 kb on + strand, within BWI76_RS01850at 378.006 kb on - strand, within BWI76_RS01850at 378.093 kb on + strand, within BWI76_RS01850at 378.108 kb on + strand, within BWI76_RS01850at 378.383 kb on - strandat 378.398 kb on + strandat 378.427 kb on + strandat 378.427 kb on + strandat 378.435 kb on - strandat 378.887 kb on + strand, within BWI76_RS01855at 378.895 kb on - strand, within BWI76_RS01855at 379.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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376,547 - BWI76_RS01845 0.37 -0.8
376,708 + BWI76_RS01845 0.50 -0.2
376,708 + BWI76_RS01845 0.50 -0.6
376,733 - BWI76_RS01845 0.52 -0.6
376,786 + BWI76_RS01845 0.56 -2.2
376,932 + BWI76_RS01845 0.67 -0.3
377,030 + BWI76_RS01845 0.75 +1.0
377,195 - BWI76_RS01845 0.88 +0.2
377,487 + -1.6
377,608 + BWI76_RS01850 0.16 -0.3
377,782 - BWI76_RS01850 0.34 +0.1
377,998 + BWI76_RS01850 0.57 +0.2
377,998 + BWI76_RS01850 0.57 -0.0
377,998 + BWI76_RS01850 0.57 -0.4
378,006 - BWI76_RS01850 0.58 +0.0
378,093 + BWI76_RS01850 0.68 +0.1
378,108 + BWI76_RS01850 0.69 -0.3
378,383 - +1.4
378,398 + +0.4
378,427 + +0.2
378,427 + +1.5
378,435 - +0.9
378,887 + BWI76_RS01855 0.61 -0.2
378,895 - BWI76_RS01855 0.63 -1.8
379,069 + +0.2

Or see this region's nucleotide sequence