Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01640 and BWI76_RS01645 are separated by 54 nucleotides BWI76_RS01645 and BWI76_RS01650 are separated by 99 nucleotides BWI76_RS01650 and BWI76_RS01655 are separated by 156 nucleotides BWI76_RS01655 and BWI76_RS01660 are separated by 259 nucleotides
BWI76_RS01640: BWI76_RS01640 - 23S ribosomal RNA, at 331,939 to 334,865
_RS01640
BWI76_RS01645: BWI76_RS01645 - 5S ribosomal RNA, at 334,920 to 335,035
_RS01645
BWI76_RS01650: BWI76_RS01650 - acetyltransferase, at 335,135 to 335,572
_RS01650
BWI76_RS01655: BWI76_RS01655 - homoserine O-succinyltransferase, at 335,729 to 336,658
_RS01655
BWI76_RS01660: BWI76_RS01660 - malate synthase A, at 336,918 to 338,519
_RS01660
Position (kb) 335
336
337 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 335.186 kb on - strand, within BWI76_RS01650 at 335.203 kb on + strand, within BWI76_RS01650 at 335.395 kb on - strand, within BWI76_RS01650 at 335.632 kb on + strand at 335.640 kb on - strand at 335.705 kb on - strand at 335.918 kb on - strand, within BWI76_RS01655 at 336.033 kb on + strand, within BWI76_RS01655 at 336.115 kb on - strand, within BWI76_RS01655 at 336.115 kb on - strand, within BWI76_RS01655 at 336.135 kb on + strand, within BWI76_RS01655 at 336.143 kb on - strand, within BWI76_RS01655 at 336.447 kb on + strand, within BWI76_RS01655 at 336.447 kb on + strand, within BWI76_RS01655 at 336.455 kb on - strand, within BWI76_RS01655 at 336.621 kb on - strand at 336.660 kb on + strand at 336.771 kb on + strand at 336.909 kb on - strand at 336.970 kb on - strand at 337.020 kb on + strand at 337.284 kb on - strand, within BWI76_RS01660 at 337.316 kb on + strand, within BWI76_RS01660 at 337.333 kb on - strand, within BWI76_RS01660 at 337.362 kb on - strand, within BWI76_RS01660 at 337.365 kb on - strand, within BWI76_RS01660 at 337.629 kb on - strand, within BWI76_RS01660 at 337.650 kb on - strand, within BWI76_RS01660
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL remove 335,186 - BWI76_RS01650 0.12 +2.2 335,203 + BWI76_RS01650 0.16 +0.3 335,395 - BWI76_RS01650 0.59 -0.2 335,632 + +0.3 335,640 - -1.0 335,705 - -3.3 335,918 - BWI76_RS01655 0.20 -4.0 336,033 + BWI76_RS01655 0.33 +1.0 336,115 - BWI76_RS01655 0.42 -4.2 336,115 - BWI76_RS01655 0.42 -5.0 336,135 + BWI76_RS01655 0.44 -1.9 336,143 - BWI76_RS01655 0.45 -1.9 336,447 + BWI76_RS01655 0.77 -3.0 336,447 + BWI76_RS01655 0.77 -2.3 336,455 - BWI76_RS01655 0.78 -3.1 336,621 - +0.0 336,660 + -1.0 336,771 + -0.0 336,909 - +0.8 336,970 - +0.5 337,020 + -0.4 337,284 - BWI76_RS01660 0.23 +0.1 337,316 + BWI76_RS01660 0.25 +0.7 337,333 - BWI76_RS01660 0.26 -0.5 337,362 - BWI76_RS01660 0.28 -0.0 337,365 - BWI76_RS01660 0.28 +1.6 337,629 - BWI76_RS01660 0.44 +1.0 337,650 - BWI76_RS01660 0.46 +0.1
Or see this region's nucleotide sequence