Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00755

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00750 and BWI76_RS00755 are separated by 9 nucleotidesBWI76_RS00755 and BWI76_RS00760 are separated by 91 nucleotides BWI76_RS00750: BWI76_RS00750 - ATP-dependent protease ATP-binding subunit HslU, at 152,271 to 153,605 _RS00750 BWI76_RS00755: BWI76_RS00755 - ATP-dependent protease subunit HslV, at 153,615 to 154,145 _RS00755 BWI76_RS00760: BWI76_RS00760 - cell division protein FtsN, at 154,237 to 155,211 _RS00760 Position (kb) 153 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1at 152.745 kb on - strand, within BWI76_RS00750at 152.784 kb on - strand, within BWI76_RS00750at 152.931 kb on - strand, within BWI76_RS00750at 153.078 kb on - strand, within BWI76_RS00750at 153.484 kb on - strandat 153.489 kb on - strandat 153.823 kb on + strand, within BWI76_RS00755at 153.967 kb on + strand, within BWI76_RS00755at 154.069 kb on + strand, within BWI76_RS00755at 154.077 kb on - strand, within BWI76_RS00755at 154.082 kb on - strand, within BWI76_RS00755at 154.114 kb on - strandat 154.369 kb on - strand, within BWI76_RS00760at 154.417 kb on - strand, within BWI76_RS00760at 154.532 kb on + strand, within BWI76_RS00760at 154.540 kb on - strand, within BWI76_RS00760at 154.540 kb on - strand, within BWI76_RS00760at 154.540 kb on - strand, within BWI76_RS00760at 154.565 kb on - strand, within BWI76_RS00760

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
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152,745 - BWI76_RS00750 0.36 -1.2
152,784 - BWI76_RS00750 0.38 -1.0
152,931 - BWI76_RS00750 0.49 +0.2
153,078 - BWI76_RS00750 0.60 -0.4
153,484 - +1.0
153,489 - -1.4
153,823 + BWI76_RS00755 0.39 -3.6
153,967 + BWI76_RS00755 0.66 -2.7
154,069 + BWI76_RS00755 0.85 -1.4
154,077 - BWI76_RS00755 0.87 -3.0
154,082 - BWI76_RS00755 0.88 -0.2
154,114 - -1.0
154,369 - BWI76_RS00760 0.14 -2.4
154,417 - BWI76_RS00760 0.18 -0.0
154,532 + BWI76_RS00760 0.30 -2.8
154,540 - BWI76_RS00760 0.31 -0.9
154,540 - BWI76_RS00760 0.31 -0.8
154,540 - BWI76_RS00760 0.31 -0.4
154,565 - BWI76_RS00760 0.34 -1.0

Or see this region's nucleotide sequence