Strain Fitness in Shewanella oneidensis MR-1 around SO3113

Experiment: LB anaerobic; ground control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB anaerobic; ground control
3,240,750	-	secD-2	SO3111	0.68	-2.7
3,240,751	-	secD-2	SO3111	0.68	+1.8
3,241,007	+	secD-2	SO3111	0.82	-1.1
3,241,153	+	secD-2	SO3111	0.90	+1.1
3,241,175	-				-0.1
3,241,196	-				-1.5
3,241,214	-				-0.0
3,241,342	+				+2.7
3,241,350	-				-0.1
3,241,350	-				-0.3
3,241,377	-				+1.2
3,241,651	-	yajC	SO3112	0.88	-0.3
3,241,651	-	yajC	SO3112	0.88	-1.4
3,241,913	-	tgt	SO3113	0.17	-0.5
3,242,050	+	tgt	SO3113	0.30	-2.4
3,242,071	+	tgt	SO3113	0.31	-2.1
3,242,236	-	tgt	SO3113	0.46	-1.9
3,242,286	-	tgt	SO3113	0.51	-2.3
3,242,320	+	tgt	SO3113	0.54	-3.2
3,242,345	+	tgt	SO3113	0.56	-2.3
3,242,364	+	tgt	SO3113	0.58	-1.6
3,242,427	+	tgt	SO3113	0.63	-1.9
3,242,663	-	tgt	SO3113	0.84	-2.3
3,242,669	+	tgt	SO3113	0.85	-0.9
3,242,669	+	tgt	SO3113	0.85	-0.4
3,242,677	-	tgt	SO3113	0.85	-0.1
3,242,722	-	tgt	SO3113	0.89	+1.5
3,242,724	-	tgt	SO3113	0.90	+1.7
3,242,964	+				-0.3
3,242,964	+				-0.9
3,243,226	+	queA	SO3114	0.21	+0.7
3,243,226	+	queA	SO3114	0.21	-1.5
3,243,260	-	queA	SO3114	0.25	-0.9
3,243,353	+	queA	SO3114	0.34	-0.4
3,243,545	-	queA	SO3114	0.52	+2.0
3,243,568	-	queA	SO3114	0.54	-0.7
3,243,612	-	queA	SO3114	0.59	+1.0
3,243,627	-	queA	SO3114	0.60	+0.5
3,243,629	+	queA	SO3114	0.60	-2.4
3,243,751	-	queA	SO3114	0.72	+0.7
3,243,766	+	queA	SO3114	0.74	-0.3
3,243,825	-	queA	SO3114	0.79	-2.3