Experiment: LB anaerobic; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0675 and SO0676 are separated by 70 nucleotides SO0676 and SO0677 are separated by 2 nucleotides SO0677 and SO0678 overlap by 1 nucleotides SO0678 and SO0679 are separated by 28 nucleotides
SO0675: SO0675 - prophage MuSo1, major head subunit, putative (NCBI ptt file), at 693,403 to 694,323
SO0675
SO0676: SO0676 - conserved hypothetical protein (NCBI ptt file), at 694,394 to 694,840
SO0676
SO0677: SO0677 - conserved hypothetical protein (NCBI ptt file), at 694,843 to 695,283
SO0677
SO0678: SO0678 - hypothetical protein (NCBI ptt file), at 695,283 to 695,726
SO0678
SO0679: SO0679 - hypothetical protein (NCBI ptt file), at 695,755 to 696,501
SO0679
Position (kb) 694
695
696 Strain fitness (log2 ratio) -2
-1
0
1
2 at 693.868 kb on - strand, within SO0675 at 693.889 kb on - strand, within SO0675 at 693.892 kb on + strand, within SO0675 at 693.901 kb on + strand, within SO0675 at 693.926 kb on - strand, within SO0675 at 693.995 kb on - strand, within SO0675 at 694.045 kb on - strand, within SO0675 at 694.050 kb on - strand, within SO0675 at 694.060 kb on + strand, within SO0675 at 694.089 kb on - strand, within SO0675 at 694.145 kb on - strand, within SO0675 at 694.194 kb on - strand, within SO0675 at 694.216 kb on - strand, within SO0675 at 694.238 kb on + strand at 694.246 kb on - strand at 694.270 kb on + strand at 694.270 kb on - strand at 694.287 kb on + strand at 694.317 kb on - strand at 694.347 kb on - strand at 694.456 kb on + strand, within SO0676 at 694.463 kb on + strand, within SO0676 at 694.464 kb on - strand, within SO0676 at 694.486 kb on - strand, within SO0676 at 694.492 kb on - strand, within SO0676 at 694.546 kb on + strand, within SO0676 at 694.546 kb on + strand, within SO0676 at 694.563 kb on + strand, within SO0676 at 694.563 kb on + strand, within SO0676 at 694.648 kb on + strand, within SO0676 at 694.738 kb on + strand, within SO0676 at 694.754 kb on + strand, within SO0676 at 694.785 kb on - strand, within SO0676 at 694.862 kb on - strand at 694.872 kb on - strand at 694.899 kb on + strand, within SO0677 at 694.899 kb on + strand, within SO0677 at 694.907 kb on - strand, within SO0677 at 694.907 kb on - strand, within SO0677 at 694.909 kb on - strand, within SO0677 at 694.921 kb on + strand, within SO0677 at 695.102 kb on + strand, within SO0677 at 695.102 kb on + strand, within SO0677 at 695.110 kb on - strand, within SO0677 at 695.110 kb on - strand, within SO0677 at 695.110 kb on - strand, within SO0677 at 695.157 kb on + strand, within SO0677 at 695.157 kb on + strand, within SO0677 at 695.182 kb on - strand, within SO0677 at 695.182 kb on - strand, within SO0677 at 695.266 kb on + strand at 695.280 kb on - strand at 695.322 kb on + strand at 695.322 kb on + strand at 695.330 kb on - strand, within SO0678 at 695.330 kb on - strand, within SO0678 at 695.406 kb on - strand, within SO0678 at 695.406 kb on - strand, within SO0678 at 695.459 kb on + strand, within SO0678 at 695.499 kb on - strand, within SO0678 at 695.501 kb on + strand, within SO0678 at 695.509 kb on - strand, within SO0678 at 695.509 kb on - strand, within SO0678 at 695.514 kb on + strand, within SO0678 at 695.561 kb on - strand, within SO0678 at 695.591 kb on - strand, within SO0678 at 695.602 kb on - strand, within SO0678 at 695.636 kb on + strand, within SO0678 at 695.636 kb on + strand, within SO0678 at 695.644 kb on - strand, within SO0678 at 695.677 kb on + strand, within SO0678 at 695.678 kb on + strand, within SO0678 at 695.917 kb on + strand, within SO0679 at 695.924 kb on - strand, within SO0679 at 695.925 kb on - strand, within SO0679 at 696.035 kb on + strand, within SO0679 at 696.055 kb on + strand, within SO0679 at 696.063 kb on - strand, within SO0679 at 696.086 kb on - strand, within SO0679 at 696.113 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.179 kb on - strand, within SO0679 at 696.196 kb on - strand, within SO0679 at 696.216 kb on + strand, within SO0679 at 696.242 kb on + strand, within SO0679 at 696.255 kb on - strand, within SO0679 at 696.260 kb on - strand, within SO0679
Per-strain Table
Position Strand Gene LocusTag Fraction LB anaerobic; ground control remove 693,868 - SO0675 0.50 -0.8 693,889 - SO0675 0.53 -0.2 693,892 + SO0675 0.53 -0.5 693,901 + SO0675 0.54 -1.4 693,926 - SO0675 0.57 +0.2 693,995 - SO0675 0.64 +0.5 694,045 - SO0675 0.70 -2.6 694,050 - SO0675 0.70 +0.7 694,060 + SO0675 0.71 -1.4 694,089 - SO0675 0.74 +0.2 694,145 - SO0675 0.81 +0.6 694,194 - SO0675 0.86 +1.5 694,216 - SO0675 0.88 +0.1 694,238 + +0.5 694,246 - +0.4 694,270 + +0.3 694,270 - +0.6 694,287 + +0.1 694,317 - -2.3 694,347 - -1.6 694,456 + SO0676 0.14 -1.8 694,463 + SO0676 0.15 +0.5 694,464 - SO0676 0.16 +0.9 694,486 - SO0676 0.21 -2.3 694,492 - SO0676 0.22 +0.8 694,546 + SO0676 0.34 -1.0 694,546 + SO0676 0.34 +1.2 694,563 + SO0676 0.38 +1.4 694,563 + SO0676 0.38 -0.2 694,648 + SO0676 0.57 +1.6 694,738 + SO0676 0.77 +0.7 694,754 + SO0676 0.81 +0.8 694,785 - SO0676 0.87 -0.1 694,862 - -0.8 694,872 - -0.3 694,899 + SO0677 0.13 -2.7 694,899 + SO0677 0.13 -1.2 694,907 - SO0677 0.15 +0.8 694,907 - SO0677 0.15 -1.7 694,909 - SO0677 0.15 -1.1 694,921 + SO0677 0.18 -0.5 695,102 + SO0677 0.59 -0.8 695,102 + SO0677 0.59 +0.1 695,110 - SO0677 0.61 +1.5 695,110 - SO0677 0.61 +1.8 695,110 - SO0677 0.61 +0.4 695,157 + SO0677 0.71 -0.7 695,157 + SO0677 0.71 -0.4 695,182 - SO0677 0.77 -1.0 695,182 - SO0677 0.77 +0.2 695,266 + -1.2 695,280 - -1.8 695,322 + +0.2 695,322 + -1.2 695,330 - SO0678 0.11 -0.1 695,330 - SO0678 0.11 +0.9 695,406 - SO0678 0.28 -1.6 695,406 - SO0678 0.28 +0.1 695,459 + SO0678 0.40 -1.4 695,499 - SO0678 0.49 +0.4 695,501 + SO0678 0.49 -0.5 695,509 - SO0678 0.51 -1.0 695,509 - SO0678 0.51 +1.7 695,514 + SO0678 0.52 -1.6 695,561 - SO0678 0.63 -0.1 695,591 - SO0678 0.69 +0.3 695,602 - SO0678 0.72 -0.8 695,636 + SO0678 0.80 +1.2 695,636 + SO0678 0.80 +1.1 695,644 - SO0678 0.81 +0.3 695,677 + SO0678 0.89 -0.1 695,678 + SO0678 0.89 -0.2 695,917 + SO0679 0.22 -1.7 695,924 - SO0679 0.23 +0.1 695,925 - SO0679 0.23 -0.6 696,035 + SO0679 0.37 +0.3 696,055 + SO0679 0.40 -1.5 696,063 - SO0679 0.41 +0.7 696,086 - SO0679 0.44 +0.6 696,113 + SO0679 0.48 -2.3 696,146 + SO0679 0.52 -0.9 696,146 + SO0679 0.52 +0.7 696,146 + SO0679 0.52 -2.0 696,146 + SO0679 0.52 -0.2 696,146 + SO0679 0.52 +0.5 696,146 + SO0679 0.52 +0.3 696,146 + SO0679 0.52 -1.9 696,146 + SO0679 0.52 -1.0 696,146 + SO0679 0.52 +0.9 696,146 + SO0679 0.52 -1.2 696,146 + SO0679 0.52 +0.9 696,154 - SO0679 0.53 -0.2 696,154 - SO0679 0.53 -1.1 696,154 - SO0679 0.53 -2.6 696,154 - SO0679 0.53 -0.1 696,154 - SO0679 0.53 -0.0 696,154 - SO0679 0.53 -0.2 696,154 - SO0679 0.53 -0.7 696,154 - SO0679 0.53 -1.0 696,154 - SO0679 0.53 +0.0 696,154 - SO0679 0.53 +0.2 696,154 - SO0679 0.53 -0.3 696,154 - SO0679 0.53 +0.6 696,154 - SO0679 0.53 -0.6 696,154 - SO0679 0.53 +0.2 696,154 - SO0679 0.53 +0.1 696,179 - SO0679 0.57 -1.8 696,196 - SO0679 0.59 -1.0 696,216 + SO0679 0.62 +0.7 696,242 + SO0679 0.65 +0.2 696,255 - SO0679 0.67 -2.0 696,260 - SO0679 0.68 +2.2
Or see this region's nucleotide sequence