Experiment: LB anaerobic; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0656 and SO0657 are separated by 59 nucleotides SO0657 and SO0658 overlap by 4 nucleotides SO0658 and SO0659 overlap by 11 nucleotides SO0659 and SO0660 overlap by 40 nucleotides
SO0656: SO0656 - ISSod1, transposase OrfA (NCBI ptt file), at 679,107 to 679,397
SO0656
SO0657: SO0657 - ISSod1, transposase OrfB (NCBI ptt file), at 679,457 to 680,266
SO0657
SO0658: SO0658 - hypothetical protein (NCBI ptt file), at 680,263 to 680,646
SO0658
SO0659: SO0659 - lysozyme, putative (NCBI ptt file), at 680,636 to 681,193
SO0659
SO0660: SO0660 - hypothetical protein (NCBI ptt file), at 681,154 to 681,759
SO0660
Position (kb) 680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 680.265 kb on + strand at 680.275 kb on + strand at 680.305 kb on + strand, within SO0658 at 680.316 kb on - strand, within SO0658 at 680.399 kb on + strand, within SO0658 at 680.407 kb on - strand, within SO0658 at 680.463 kb on - strand, within SO0658 at 680.476 kb on - strand, within SO0658 at 680.483 kb on - strand, within SO0658 at 680.483 kb on - strand, within SO0658 at 680.550 kb on - strand, within SO0658 at 680.560 kb on - strand, within SO0658 at 680.565 kb on - strand, within SO0658 at 680.620 kb on + strand at 680.621 kb on + strand at 680.629 kb on - strand at 680.647 kb on + strand at 680.680 kb on - strand at 680.712 kb on - strand, within SO0659 at 680.751 kb on + strand, within SO0659 at 680.793 kb on + strand, within SO0659 at 680.812 kb on - strand, within SO0659 at 680.819 kb on - strand, within SO0659 at 680.892 kb on + strand, within SO0659 at 680.892 kb on + strand, within SO0659 at 680.892 kb on + strand, within SO0659 at 680.892 kb on + strand, within SO0659 at 680.892 kb on + strand, within SO0659 at 680.900 kb on - strand, within SO0659 at 680.900 kb on - strand, within SO0659 at 680.967 kb on + strand, within SO0659 at 680.967 kb on + strand, within SO0659 at 681.026 kb on + strand, within SO0659 at 681.034 kb on - strand, within SO0659 at 681.034 kb on - strand, within SO0659 at 681.082 kb on - strand, within SO0659 at 681.099 kb on + strand, within SO0659 at 681.124 kb on + strand, within SO0659 at 681.252 kb on + strand, within SO0660 at 681.325 kb on - strand, within SO0660 at 681.443 kb on + strand, within SO0660 at 681.450 kb on + strand, within SO0660 at 681.614 kb on + strand, within SO0660 at 681.622 kb on - strand, within SO0660 at 681.622 kb on - strand, within SO0660 at 681.643 kb on - strand, within SO0660
Per-strain Table
Position Strand Gene LocusTag Fraction LB anaerobic; ground control remove 680,265 + +1.0 680,275 + -0.4 680,305 + SO0658 0.11 +0.0 680,316 - SO0658 0.14 -1.3 680,399 + SO0658 0.35 -0.7 680,407 - SO0658 0.38 -2.0 680,463 - SO0658 0.52 -3.0 680,476 - SO0658 0.55 -0.8 680,483 - SO0658 0.57 -0.4 680,483 - SO0658 0.57 -1.6 680,550 - SO0658 0.75 -2.4 680,560 - SO0658 0.77 -0.7 680,565 - SO0658 0.79 -2.0 680,620 + +0.2 680,621 + +1.5 680,629 - -0.3 680,647 + +0.6 680,680 - -0.7 680,712 - SO0659 0.14 -0.6 680,751 + SO0659 0.21 +0.5 680,793 + SO0659 0.28 +0.5 680,812 - SO0659 0.32 -1.5 680,819 - SO0659 0.33 -0.9 680,892 + SO0659 0.46 +0.2 680,892 + SO0659 0.46 -0.6 680,892 + SO0659 0.46 +0.2 680,892 + SO0659 0.46 -0.7 680,892 + SO0659 0.46 -0.3 680,900 - SO0659 0.47 -2.4 680,900 - SO0659 0.47 -0.5 680,967 + SO0659 0.59 -0.1 680,967 + SO0659 0.59 +0.4 681,026 + SO0659 0.70 +0.9 681,034 - SO0659 0.71 +0.2 681,034 - SO0659 0.71 -0.3 681,082 - SO0659 0.80 -0.2 681,099 + SO0659 0.83 +0.0 681,124 + SO0659 0.87 +0.5 681,252 + SO0660 0.16 -3.7 681,325 - SO0660 0.28 -2.0 681,443 + SO0660 0.48 +0.7 681,450 + SO0660 0.49 +0.2 681,614 + SO0660 0.76 -0.3 681,622 - SO0660 0.77 -0.6 681,622 - SO0660 0.77 +0.5 681,643 - SO0660 0.81 +0.2
Or see this region's nucleotide sequence