Experiment: LB anaerobic; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0501 and SO0502 are separated by 275 nucleotides SO0502 and SO0503 are separated by 200 nucleotides SO0503 and SO0503.1 overlap by 628 nucleotides SO0503.1 and fre are separated by 654 nucleotides
SO0501: SO0501 - conserved hypothetical protein (NCBI ptt file), at 528,063 to 528,719
SO0501
SO0502: SO0502 - transcriptional regulator, ArsR family (NCBI ptt file), at 528,995 to 529,330
SO0502
SO0503: SO0503 - conserved hypothetical protein (NCBI ptt file), at 529,531 to 530,607
SO0503
SO0503.1: SO0503.1 - hypothetical protein (NCBI ptt file), at 529,980 to 530,195
SO0503.1
SO0504: fre - NAD(P)H-flavin reductase (NCBI ptt file), at 530,850 to 531,548
fre
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 528.587 kb on + strand, within SO0501 at 528.787 kb on - strand at 528.802 kb on + strand at 528.813 kb on - strand at 528.818 kb on + strand at 528.833 kb on + strand at 528.833 kb on + strand at 528.833 kb on + strand at 528.833 kb on + strand at 528.834 kb on - strand at 528.867 kb on - strand at 528.959 kb on + strand at 528.974 kb on + strand at 528.974 kb on + strand at 528.974 kb on + strand at 528.974 kb on + strand at 528.982 kb on - strand at 528.982 kb on - strand at 528.982 kb on - strand at 528.983 kb on - strand at 528.993 kb on - strand at 529.024 kb on + strand at 529.037 kb on - strand, within SO0502 at 529.091 kb on + strand, within SO0502 at 529.091 kb on + strand, within SO0502 at 529.091 kb on + strand, within SO0502 at 529.091 kb on + strand, within SO0502 at 529.091 kb on + strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.178 kb on + strand, within SO0502 at 529.236 kb on + strand, within SO0502 at 529.244 kb on - strand, within SO0502 at 529.246 kb on + strand, within SO0502 at 529.535 kb on + strand at 529.535 kb on + strand at 529.543 kb on - strand at 529.639 kb on + strand, within SO0503 at 529.647 kb on - strand, within SO0503 at 529.649 kb on + strand, within SO0503 at 529.679 kb on - strand, within SO0503 at 529.719 kb on + strand, within SO0503 at 529.776 kb on + strand, within SO0503 at 529.776 kb on + strand, within SO0503 at 529.779 kb on - strand, within SO0503 at 529.784 kb on - strand, within SO0503 at 529.784 kb on - strand, within SO0503 at 529.784 kb on - strand, within SO0503 at 529.800 kb on - strand, within SO0503 at 529.896 kb on - strand, within SO0503 at 530.001 kb on - strand at 530.093 kb on + strand at 530.093 kb on + strand at 530.093 kb on + strand at 530.093 kb on + strand at 530.093 kb on + strand at 530.123 kb on + strand at 530.124 kb on + strand at 530.197 kb on + strand, within SO0503 at 530.258 kb on + strand, within SO0503 at 530.272 kb on + strand, within SO0503 at 530.340 kb on - strand, within SO0503 at 530.350 kb on + strand, within SO0503 at 530.410 kb on - strand, within SO0503 at 530.422 kb on + strand, within SO0503 at 530.461 kb on + strand, within SO0503 at 530.577 kb on - strand at 530.649 kb on + strand at 530.649 kb on + strand at 530.659 kb on + strand at 530.659 kb on + strand at 530.660 kb on + strand at 530.667 kb on - strand at 530.668 kb on - strand at 530.683 kb on + strand at 530.696 kb on + strand at 530.704 kb on - strand at 530.870 kb on - strand at 530.875 kb on + strand at 530.883 kb on - strand at 530.926 kb on + strand, within fre at 531.071 kb on - strand, within fre at 531.111 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.144 kb on - strand, within fre at 531.144 kb on - strand, within fre at 531.144 kb on - strand, within fre at 531.144 kb on - strand, within fre at 531.144 kb on - strand, within fre at 531.151 kb on + strand, within fre at 531.187 kb on + strand, within fre at 531.228 kb on + strand, within fre at 531.247 kb on + strand, within fre at 531.255 kb on + strand, within fre at 531.263 kb on - strand, within fre at 531.334 kb on - strand, within fre at 531.512 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB anaerobic; ground control remove 528,587 + SO0501 0.80 +0.1 528,787 - +1.5 528,802 + -0.5 528,813 - +1.3 528,818 + +0.2 528,833 + -2.1 528,833 + -1.5 528,833 + +1.6 528,833 + -0.3 528,834 - -1.2 528,867 - -0.9 528,959 + -1.3 528,974 + +1.3 528,974 + -1.3 528,974 + -1.7 528,974 + +0.4 528,982 - +0.5 528,982 - -0.4 528,982 - -0.4 528,983 - -0.2 528,993 - +0.6 529,024 + +0.6 529,037 - SO0502 0.12 +0.5 529,091 + SO0502 0.29 +0.7 529,091 + SO0502 0.29 +1.1 529,091 + SO0502 0.29 -1.4 529,091 + SO0502 0.29 +0.5 529,091 + SO0502 0.29 +1.0 529,099 - SO0502 0.31 -1.4 529,099 - SO0502 0.31 -1.2 529,099 - SO0502 0.31 -1.7 529,099 - SO0502 0.31 +0.9 529,099 - SO0502 0.31 +0.9 529,099 - SO0502 0.31 -1.7 529,178 + SO0502 0.54 +0.2 529,236 + SO0502 0.72 +0.5 529,244 - SO0502 0.74 -0.7 529,246 + SO0502 0.75 +0.5 529,535 + +1.6 529,535 + -1.5 529,543 - +0.1 529,639 + SO0503 0.10 +0.7 529,647 - SO0503 0.11 -1.3 529,649 + SO0503 0.11 -1.3 529,679 - SO0503 0.14 -0.3 529,719 + SO0503 0.17 -0.8 529,776 + SO0503 0.23 +0.7 529,776 + SO0503 0.23 -0.3 529,779 - SO0503 0.23 +1.6 529,784 - SO0503 0.23 +0.1 529,784 - SO0503 0.23 -0.8 529,784 - SO0503 0.23 -3.5 529,800 - SO0503 0.25 -1.9 529,896 - SO0503 0.34 -0.2 530,001 - -0.8 530,093 + -0.5 530,093 + -1.1 530,093 + +0.4 530,093 + -0.3 530,093 + -0.4 530,123 + +0.8 530,124 + -0.1 530,197 + SO0503 0.62 -1.2 530,258 + SO0503 0.68 -0.3 530,272 + SO0503 0.69 +0.1 530,340 - SO0503 0.75 +0.3 530,350 + SO0503 0.76 -2.7 530,410 - SO0503 0.82 -0.1 530,422 + SO0503 0.83 -0.8 530,461 + SO0503 0.86 -1.5 530,577 - +0.8 530,649 + +0.2 530,649 + -0.3 530,659 + +1.5 530,659 + -0.5 530,660 + +2.8 530,667 - -0.4 530,668 - +0.1 530,683 + +0.7 530,696 + +1.0 530,704 - -0.1 530,870 - -3.1 530,875 + +4.7 530,883 - +1.9 530,926 + fre SO0504 0.11 +2.9 531,071 - fre SO0504 0.32 -0.7 531,111 + fre SO0504 0.37 +2.7 531,136 + fre SO0504 0.41 -2.1 531,136 + fre SO0504 0.41 -0.3 531,136 + fre SO0504 0.41 +1.3 531,136 + fre SO0504 0.41 +0.6 531,136 + fre SO0504 0.41 -2.2 531,136 + fre SO0504 0.41 +0.3 531,144 - fre SO0504 0.42 -1.7 531,144 - fre SO0504 0.42 +2.3 531,144 - fre SO0504 0.42 +2.9 531,144 - fre SO0504 0.42 -1.5 531,144 - fre SO0504 0.42 -1.5 531,151 + fre SO0504 0.43 +1.0 531,187 + fre SO0504 0.48 +5.2 531,228 + fre SO0504 0.54 +1.9 531,247 + fre SO0504 0.57 -0.3 531,255 + fre SO0504 0.58 -2.7 531,263 - fre SO0504 0.59 -1.1 531,334 - fre SO0504 0.69 -0.7 531,512 + -1.4
Or see this region's nucleotide sequence