Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27845 and BWI76_RS27850 are separated by 245 nucleotides BWI76_RS27850 and BWI76_RS27855 are separated by 223 nucleotides
BWI76_RS27845: BWI76_RS27845 - multidrug transporter EmrD, at 5,774,797 to 5,775,981
_RS27845
BWI76_RS27850: BWI76_RS27850 - DNA-binding transcriptional regulator DsdC, at 5,776,227 to 5,777,156
_RS27850
BWI76_RS27855: BWI76_RS27855 - D-serine transporter DsdX, at 5,777,380 to 5,778,717
_RS27855
Position (kb) 5776
5777
5778 Strain fitness (log2 ratio) -2
-1
0
1 at 5775.268 kb on + strand, within BWI76_RS27845 at 5775.370 kb on + strand, within BWI76_RS27845 at 5775.378 kb on - strand, within BWI76_RS27845 at 5775.403 kb on - strand, within BWI76_RS27845 at 5775.513 kb on - strand, within BWI76_RS27845 at 5776.186 kb on - strand at 5776.308 kb on + strand at 5776.323 kb on + strand, within BWI76_RS27850 at 5776.503 kb on + strand, within BWI76_RS27850 at 5776.799 kb on + strand, within BWI76_RS27850 at 5776.804 kb on + strand, within BWI76_RS27850 at 5776.804 kb on + strand, within BWI76_RS27850 at 5776.812 kb on - strand, within BWI76_RS27850 at 5777.023 kb on + strand, within BWI76_RS27850 at 5777.089 kb on + strand at 5777.410 kb on + strand at 5777.410 kb on + strand at 5777.418 kb on - strand at 5777.425 kb on + strand at 5777.442 kb on - strand at 5777.521 kb on - strand, within BWI76_RS27855 at 5777.666 kb on + strand, within BWI76_RS27855 at 5777.828 kb on - strand, within BWI76_RS27855 at 5777.997 kb on + strand, within BWI76_RS27855 at 5778.075 kb on + strand at 5778.075 kb on + strand, within BWI76_RS27855 at 5778.075 kb on + strand, within BWI76_RS27855 at 5778.075 kb on + strand, within BWI76_RS27855 at 5778.098 kb on + strand, within BWI76_RS27855
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 5,775,268 + BWI76_RS27845 0.40 -0.4 5,775,370 + BWI76_RS27845 0.48 -1.0 5,775,378 - BWI76_RS27845 0.49 -0.3 5,775,403 - BWI76_RS27845 0.51 -0.5 5,775,513 - BWI76_RS27845 0.60 -0.4 5,776,186 - -0.0 5,776,308 + +0.1 5,776,323 + BWI76_RS27850 0.10 +1.6 5,776,503 + BWI76_RS27850 0.30 +0.7 5,776,799 + BWI76_RS27850 0.62 +0.6 5,776,804 + BWI76_RS27850 0.62 +0.2 5,776,804 + BWI76_RS27850 0.62 +1.5 5,776,812 - BWI76_RS27850 0.63 +0.5 5,777,023 + BWI76_RS27850 0.86 +0.7 5,777,089 + -2.6 5,777,410 + -1.4 5,777,410 + +0.6 5,777,418 - +0.2 5,777,425 + +0.1 5,777,442 - +0.4 5,777,521 - BWI76_RS27855 0.11 +1.6 5,777,666 + BWI76_RS27855 0.21 +0.2 5,777,828 - BWI76_RS27855 0.33 -0.6 5,777,997 + BWI76_RS27855 0.46 -0.8 5,778,075 + +0.9 5,778,075 + BWI76_RS27855 0.52 -0.7 5,778,075 + BWI76_RS27855 0.52 -1.4 5,778,075 + BWI76_RS27855 0.52 +0.0 5,778,098 + BWI76_RS27855 0.54 +0.2
Or see this region's nucleotide sequence