Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26170 and BWI76_RS26175 are separated by 168 nucleotides BWI76_RS26175 and BWI76_RS26180 are separated by 19 nucleotides BWI76_RS26180 and BWI76_RS26185 are separated by 59 nucleotides
BWI76_RS26170: BWI76_RS26170 - transcriptional regulator MalT, at 5,410,347 to 5,413,052
_RS26170
BWI76_RS26175: BWI76_RS26175 - DeoR/GlpR family transcriptional regulator, at 5,413,221 to 5,413,979
_RS26175
BWI76_RS26180: BWI76_RS26180 - rhomboid family intramembrane serine protease GlpG, at 5,413,999 to 5,414,829
_RS26180
BWI76_RS26185: BWI76_RS26185 - thiosulfate sulfurtransferase, at 5,414,889 to 5,415,218
_RS26185
Position (kb) 5413
5414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5412.554 kb on + strand, within BWI76_RS26170 at 5412.892 kb on - strand at 5413.077 kb on + strand at 5413.290 kb on + strand at 5413.290 kb on + strand at 5413.291 kb on + strand at 5413.300 kb on + strand, within BWI76_RS26175 at 5413.423 kb on - strand, within BWI76_RS26175 at 5413.439 kb on - strand, within BWI76_RS26175 at 5413.514 kb on - strand, within BWI76_RS26175 at 5413.786 kb on + strand, within BWI76_RS26175 at 5413.805 kb on - strand, within BWI76_RS26175 at 5414.067 kb on + strand at 5414.137 kb on - strand, within BWI76_RS26180 at 5414.249 kb on + strand, within BWI76_RS26180 at 5414.270 kb on + strand, within BWI76_RS26180 at 5414.384 kb on - strand, within BWI76_RS26180 at 5414.395 kb on + strand, within BWI76_RS26180 at 5414.395 kb on + strand, within BWI76_RS26180 at 5414.447 kb on + strand, within BWI76_RS26180 at 5414.608 kb on + strand, within BWI76_RS26180 at 5414.785 kb on + strand at 5414.793 kb on - strand at 5414.886 kb on + strand at 5414.964 kb on - strand, within BWI76_RS26185
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 5,412,554 + BWI76_RS26170 0.82 +0.1 5,412,892 - -0.1 5,413,077 + +2.0 5,413,290 + -0.6 5,413,290 + +0.1 5,413,291 + -1.3 5,413,300 + BWI76_RS26175 0.10 -0.6 5,413,423 - BWI76_RS26175 0.27 -1.1 5,413,439 - BWI76_RS26175 0.29 -1.1 5,413,514 - BWI76_RS26175 0.39 -1.9 5,413,786 + BWI76_RS26175 0.74 -1.5 5,413,805 - BWI76_RS26175 0.77 -1.1 5,414,067 + -1.0 5,414,137 - BWI76_RS26180 0.17 -3.3 5,414,249 + BWI76_RS26180 0.30 -1.8 5,414,270 + BWI76_RS26180 0.33 -0.0 5,414,384 - BWI76_RS26180 0.46 +1.0 5,414,395 + BWI76_RS26180 0.48 +0.3 5,414,395 + BWI76_RS26180 0.48 -0.3 5,414,447 + BWI76_RS26180 0.54 -1.3 5,414,608 + BWI76_RS26180 0.73 +0.9 5,414,785 + -0.0 5,414,793 - -0.7 5,414,886 + +0.3 5,414,964 - BWI76_RS26185 0.23 -0.1
Or see this region's nucleotide sequence