Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24340 and BWI76_RS24345 are separated by 106 nucleotides BWI76_RS24345 and BWI76_RS24350 are separated by 90 nucleotides BWI76_RS24350 and BWI76_RS24355 are separated by 44 nucleotides
BWI76_RS24340: BWI76_RS24340 - two-component sensor histidine kinase, at 5,073,003 to 5,074,352
_RS24340
BWI76_RS24345: BWI76_RS24345 - NADPH quinone reductase MdaB, at 5,074,459 to 5,075,040
_RS24345
BWI76_RS24350: BWI76_RS24350 - quinol monooxygenase, at 5,075,131 to 5,075,445
_RS24350
BWI76_RS24355: BWI76_RS24355 - hypothetical protein, at 5,075,490 to 5,076,680
_RS24355
Position (kb) 5075
5076 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5074.134 kb on - strand, within BWI76_RS24340 at 5074.196 kb on - strand, within BWI76_RS24340 at 5074.257 kb on - strand at 5074.257 kb on - strand at 5074.259 kb on + strand at 5074.314 kb on + strand at 5074.571 kb on + strand, within BWI76_RS24345 at 5074.725 kb on - strand, within BWI76_RS24345 at 5074.743 kb on - strand, within BWI76_RS24345 at 5074.830 kb on - strand, within BWI76_RS24345 at 5074.919 kb on - strand, within BWI76_RS24345 at 5075.040 kb on + strand at 5075.040 kb on + strand at 5075.051 kb on - strand at 5075.132 kb on + strand at 5075.175 kb on - strand, within BWI76_RS24350 at 5075.382 kb on + strand, within BWI76_RS24350 at 5075.509 kb on - strand at 5075.518 kb on + strand at 5075.616 kb on + strand, within BWI76_RS24355 at 5075.625 kb on - strand, within BWI76_RS24355 at 5075.625 kb on - strand, within BWI76_RS24355 at 5075.644 kb on + strand, within BWI76_RS24355 at 5075.688 kb on - strand, within BWI76_RS24355 at 5075.744 kb on - strand, within BWI76_RS24355 at 5075.791 kb on + strand, within BWI76_RS24355 at 5075.799 kb on - strand, within BWI76_RS24355 at 5075.885 kb on + strand, within BWI76_RS24355 at 5075.900 kb on + strand, within BWI76_RS24355 at 5075.908 kb on - strand, within BWI76_RS24355 at 5076.202 kb on + strand, within BWI76_RS24355 at 5076.368 kb on + strand, within BWI76_RS24355 at 5076.378 kb on - strand, within BWI76_RS24355 at 5076.430 kb on - strand, within BWI76_RS24355 at 5076.445 kb on - strand, within BWI76_RS24355
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 5,074,134 - BWI76_RS24340 0.84 +0.3 5,074,196 - BWI76_RS24340 0.88 -3.3 5,074,257 - -3.6 5,074,257 - -1.9 5,074,259 + -2.6 5,074,314 + -3.9 5,074,571 + BWI76_RS24345 0.19 -0.2 5,074,725 - BWI76_RS24345 0.46 -0.4 5,074,743 - BWI76_RS24345 0.49 +0.1 5,074,830 - BWI76_RS24345 0.64 +0.3 5,074,919 - BWI76_RS24345 0.79 +2.1 5,075,040 + +0.1 5,075,040 + +1.0 5,075,051 - -0.7 5,075,132 + +1.9 5,075,175 - BWI76_RS24350 0.14 +1.4 5,075,382 + BWI76_RS24350 0.80 +0.4 5,075,509 - -0.1 5,075,518 + -0.1 5,075,616 + BWI76_RS24355 0.11 +0.7 5,075,625 - BWI76_RS24355 0.11 -1.2 5,075,625 - BWI76_RS24355 0.11 -0.0 5,075,644 + BWI76_RS24355 0.13 +0.2 5,075,688 - BWI76_RS24355 0.17 +0.3 5,075,744 - BWI76_RS24355 0.21 +0.3 5,075,791 + BWI76_RS24355 0.25 -0.7 5,075,799 - BWI76_RS24355 0.26 -1.3 5,075,885 + BWI76_RS24355 0.33 +1.2 5,075,900 + BWI76_RS24355 0.34 +0.5 5,075,908 - BWI76_RS24355 0.35 +1.3 5,076,202 + BWI76_RS24355 0.60 +0.1 5,076,368 + BWI76_RS24355 0.74 +0.9 5,076,378 - BWI76_RS24355 0.75 -1.4 5,076,430 - BWI76_RS24355 0.79 -0.3 5,076,445 - BWI76_RS24355 0.80 +0.2
Or see this region's nucleotide sequence