Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23980 and BWI76_RS23985 are separated by 51 nucleotides BWI76_RS23985 and BWI76_RS23990 are separated by 377 nucleotides BWI76_RS23990 and BWI76_RS23995 are separated by 24 nucleotides
BWI76_RS23980: BWI76_RS23980 - phosphoglycerate kinase, at 5,005,248 to 5,006,411
_RS23980
BWI76_RS23985: BWI76_RS23985 - erythrose-4-phosphate dehydrogenase, at 5,006,463 to 5,007,482
_RS23985
BWI76_RS23990: BWI76_RS23990 - DNA-binding protein, at 5,007,860 to 5,008,285
_RS23990
BWI76_RS23995: BWI76_RS23995 - hypothetical protein, at 5,008,310 to 5,008,888
_RS23995
Position (kb) 5006
5007
5008 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5006.473 kb on - strand at 5006.518 kb on - strand at 5006.654 kb on + strand, within BWI76_RS23985 at 5006.738 kb on + strand, within BWI76_RS23985 at 5006.829 kb on - strand, within BWI76_RS23985 at 5006.963 kb on - strand, within BWI76_RS23985 at 5006.968 kb on - strand, within BWI76_RS23985 at 5007.007 kb on - strand, within BWI76_RS23985 at 5007.222 kb on + strand, within BWI76_RS23985 at 5007.241 kb on + strand, within BWI76_RS23985 at 5007.371 kb on + strand, within BWI76_RS23985 at 5007.458 kb on - strand at 5007.490 kb on + strand at 5007.490 kb on + strand at 5007.524 kb on + strand at 5007.532 kb on - strand at 5007.532 kb on - strand at 5007.539 kb on + strand at 5007.547 kb on - strand at 5007.625 kb on - strand at 5007.875 kb on + strand at 5007.897 kb on + strand at 5007.902 kb on - strand at 5007.958 kb on + strand, within BWI76_RS23990 at 5008.024 kb on - strand, within BWI76_RS23990 at 5008.155 kb on - strand, within BWI76_RS23990 at 5008.170 kb on + strand, within BWI76_RS23990 at 5008.178 kb on - strand, within BWI76_RS23990 at 5008.188 kb on + strand, within BWI76_RS23990 at 5008.196 kb on - strand, within BWI76_RS23990
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 5,006,473 - +0.9 5,006,518 - -1.2 5,006,654 + BWI76_RS23985 0.19 -1.3 5,006,738 + BWI76_RS23985 0.27 -3.7 5,006,829 - BWI76_RS23985 0.36 -1.2 5,006,963 - BWI76_RS23985 0.49 -0.3 5,006,968 - BWI76_RS23985 0.50 -3.1 5,007,007 - BWI76_RS23985 0.53 -2.8 5,007,222 + BWI76_RS23985 0.74 +0.9 5,007,241 + BWI76_RS23985 0.76 +0.9 5,007,371 + BWI76_RS23985 0.89 -0.1 5,007,458 - -0.1 5,007,490 + -1.9 5,007,490 + +0.9 5,007,524 + -2.8 5,007,532 - -1.7 5,007,532 - +0.1 5,007,539 + +1.9 5,007,547 - -2.2 5,007,625 - +1.2 5,007,875 + +0.9 5,007,897 + +0.5 5,007,902 - +0.9 5,007,958 + BWI76_RS23990 0.23 -0.6 5,008,024 - BWI76_RS23990 0.38 -0.3 5,008,155 - BWI76_RS23990 0.69 -0.0 5,008,170 + BWI76_RS23990 0.73 -0.0 5,008,178 - BWI76_RS23990 0.75 -0.0 5,008,188 + BWI76_RS23990 0.77 +0.0 5,008,196 - BWI76_RS23990 0.79 +0.2
Or see this region's nucleotide sequence