Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22615 and BWI76_RS22620 overlap by 1 nucleotides BWI76_RS22620 and BWI76_RS22625 are separated by 170 nucleotides BWI76_RS22625 and BWI76_RS22630 overlap by 4 nucleotides BWI76_RS22630 and BWI76_RS22635 are separated by 107 nucleotides
BWI76_RS22615: BWI76_RS22615 - phenolic acid decarboxylase subunit C, at 4,714,847 to 4,716,274
_RS22615
BWI76_RS22620: BWI76_RS22620 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,716,274 to 4,716,867
_RS22620
BWI76_RS22625: BWI76_RS22625 - transcriptional regulator, at 4,717,038 to 4,717,457
_RS22625
BWI76_RS22630: BWI76_RS22630 - LysR family transcriptional regulator, at 4,717,454 to 4,718,341
_RS22630
BWI76_RS22635: BWI76_RS22635 - MFS transporter, at 4,718,449 to 4,719,663
_RS22635
Position (kb) 4717
4718 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4716.048 kb on - strand, within BWI76_RS22615 at 4716.186 kb on + strand at 4716.314 kb on - strand at 4716.398 kb on + strand, within BWI76_RS22620 at 4716.408 kb on + strand, within BWI76_RS22620 at 4716.818 kb on + strand at 4717.096 kb on - strand, within BWI76_RS22625 at 4717.503 kb on + strand at 4717.513 kb on - strand at 4717.569 kb on + strand, within BWI76_RS22630 at 4717.715 kb on + strand, within BWI76_RS22630 at 4717.731 kb on + strand, within BWI76_RS22630 at 4717.805 kb on + strand, within BWI76_RS22630 at 4718.126 kb on - strand, within BWI76_RS22630 at 4718.250 kb on + strand, within BWI76_RS22630 at 4718.258 kb on - strand at 4718.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,716,048 - BWI76_RS22615 0.84 +1.0 4,716,186 + +0.8 4,716,314 - +1.6 4,716,398 + BWI76_RS22620 0.21 +1.1 4,716,408 + BWI76_RS22620 0.23 +0.3 4,716,818 + +0.2 4,717,096 - BWI76_RS22625 0.14 -2.9 4,717,503 + -0.2 4,717,513 - +0.3 4,717,569 + BWI76_RS22630 0.13 -1.6 4,717,715 + BWI76_RS22630 0.29 +0.3 4,717,731 + BWI76_RS22630 0.31 -0.0 4,717,805 + BWI76_RS22630 0.40 -0.9 4,718,126 - BWI76_RS22630 0.76 -0.2 4,718,250 + BWI76_RS22630 0.90 +0.4 4,718,258 - +0.3 4,718,269 - -1.7
Or see this region's nucleotide sequence