Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21530 and BWI76_RS21535 are separated by 164 nucleotides BWI76_RS21535 and BWI76_RS21540 are separated by 18 nucleotides BWI76_RS21540 and BWI76_RS21545 are separated by 65 nucleotides BWI76_RS21545 and BWI76_RS21550 overlap by 36 nucleotides BWI76_RS21550 and BWI76_RS21555 are separated by 13 nucleotides
BWI76_RS21530: BWI76_RS21530 - signal recognition particle protein, at 4,507,675 to 4,509,042
_RS21530
BWI76_RS21535: BWI76_RS21535 - inner membrane protein YpjD, at 4,509,207 to 4,509,998
_RS21535
BWI76_RS21540: BWI76_RS21540 - membrane protein, at 4,510,017 to 4,511,306
_RS21540
BWI76_RS21545: BWI76_RS21545 - nucleotide exchange factor GrpE, at 4,511,372 to 4,511,962
_RS21545
BWI76_RS21550: BWI76_RS21550 - inorganic polyphosphate kinase, at 4,511,927 to 4,512,073
_RS21550
BWI76_RS21555: BWI76_RS21555 - NAD(+) kinase, at 4,512,087 to 4,512,965
_RS21555
Position (kb) 4510
4511
4512 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4509.113 kb on - strand at 4509.113 kb on - strand at 4509.145 kb on + strand at 4509.160 kb on + strand at 4509.160 kb on + strand at 4509.168 kb on - strand at 4509.168 kb on - strand at 4509.232 kb on - strand at 4509.500 kb on - strand, within BWI76_RS21535 at 4509.529 kb on + strand, within BWI76_RS21535 at 4509.615 kb on + strand, within BWI76_RS21535 at 4509.633 kb on - strand, within BWI76_RS21535 at 4509.754 kb on + strand, within BWI76_RS21535 at 4509.777 kb on - strand, within BWI76_RS21535 at 4509.777 kb on - strand, within BWI76_RS21535 at 4509.799 kb on - strand, within BWI76_RS21535 at 4509.930 kb on - strand at 4509.964 kb on - strand at 4510.036 kb on - strand at 4510.073 kb on - strand at 4510.229 kb on - strand, within BWI76_RS21540 at 4510.277 kb on + strand, within BWI76_RS21540 at 4510.602 kb on + strand, within BWI76_RS21540 at 4510.833 kb on - strand, within BWI76_RS21540 at 4510.961 kb on + strand, within BWI76_RS21540 at 4510.969 kb on - strand, within BWI76_RS21540 at 4511.210 kb on + strand at 4511.218 kb on - strand at 4511.232 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,509,113 - -1.2 4,509,113 - -0.8 4,509,145 + +0.9 4,509,160 + +1.9 4,509,160 + +1.4 4,509,168 - +2.2 4,509,168 - -0.7 4,509,232 - +1.2 4,509,500 - BWI76_RS21535 0.37 -0.1 4,509,529 + BWI76_RS21535 0.41 +0.1 4,509,615 + BWI76_RS21535 0.52 +1.4 4,509,633 - BWI76_RS21535 0.54 +1.8 4,509,754 + BWI76_RS21535 0.69 +0.0 4,509,777 - BWI76_RS21535 0.72 +2.0 4,509,777 - BWI76_RS21535 0.72 +1.9 4,509,799 - BWI76_RS21535 0.75 +0.8 4,509,930 - -1.7 4,509,964 - +3.1 4,510,036 - +4.1 4,510,073 - +2.2 4,510,229 - BWI76_RS21540 0.16 +2.7 4,510,277 + BWI76_RS21540 0.20 +2.5 4,510,602 + BWI76_RS21540 0.45 +3.2 4,510,833 - BWI76_RS21540 0.63 +2.3 4,510,961 + BWI76_RS21540 0.73 +2.3 4,510,969 - BWI76_RS21540 0.74 +2.5 4,511,210 + +2.2 4,511,218 - +3.1 4,511,232 + +2.9
Or see this region's nucleotide sequence