Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19405 and BWI76_RS19410 are separated by 169 nucleotides BWI76_RS19410 and BWI76_RS19415 are separated by 59 nucleotides BWI76_RS19415 and BWI76_RS19420 are separated by 350 nucleotides
BWI76_RS19405: BWI76_RS19405 - LysR family transcriptional regulator, at 4,048,127 to 4,049,047
_RS19405
BWI76_RS19410: BWI76_RS19410 - hypothetical protein, at 4,049,217 to 4,049,534
_RS19410
BWI76_RS19415: BWI76_RS19415 - hypothetical protein, at 4,049,594 to 4,049,923
_RS19415
BWI76_RS19420: BWI76_RS19420 - Fe-S-binding ATPase, at 4,050,274 to 4,051,383
_RS19420
Position (kb) 4049
4050 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4048.842 kb on + strand, within BWI76_RS19405 at 4049.049 kb on + strand at 4049.113 kb on - strand at 4049.118 kb on + strand at 4049.250 kb on + strand, within BWI76_RS19410 at 4049.250 kb on + strand, within BWI76_RS19410 at 4049.250 kb on + strand, within BWI76_RS19410 at 4049.250 kb on + strand, within BWI76_RS19410 at 4049.250 kb on + strand, within BWI76_RS19410 at 4049.258 kb on - strand, within BWI76_RS19410 at 4049.258 kb on - strand, within BWI76_RS19410 at 4049.258 kb on - strand, within BWI76_RS19410 at 4049.258 kb on - strand, within BWI76_RS19410 at 4049.258 kb on - strand, within BWI76_RS19410 at 4049.261 kb on + strand, within BWI76_RS19410 at 4049.273 kb on - strand, within BWI76_RS19410 at 4049.289 kb on - strand, within BWI76_RS19410 at 4049.374 kb on - strand, within BWI76_RS19410 at 4049.411 kb on - strand, within BWI76_RS19410 at 4049.422 kb on + strand, within BWI76_RS19410 at 4049.447 kb on - strand, within BWI76_RS19410 at 4049.453 kb on - strand, within BWI76_RS19410 at 4049.460 kb on + strand at 4049.461 kb on + strand, within BWI76_RS19410 at 4049.466 kb on + strand, within BWI76_RS19410 at 4049.535 kb on + strand at 4049.553 kb on - strand at 4049.555 kb on + strand at 4049.558 kb on - strand at 4049.559 kb on - strand at 4049.594 kb on - strand at 4049.594 kb on - strand at 4049.594 kb on - strand at 4049.650 kb on - strand, within BWI76_RS19415 at 4049.650 kb on - strand, within BWI76_RS19415 at 4049.665 kb on + strand, within BWI76_RS19415 at 4049.673 kb on - strand, within BWI76_RS19415 at 4049.719 kb on - strand, within BWI76_RS19415 at 4049.729 kb on + strand, within BWI76_RS19415 at 4049.785 kb on - strand, within BWI76_RS19415 at 4049.787 kb on - strand, within BWI76_RS19415 at 4049.787 kb on - strand, within BWI76_RS19415 at 4049.813 kb on - strand, within BWI76_RS19415 at 4049.826 kb on - strand at 4049.827 kb on + strand, within BWI76_RS19415 at 4049.828 kb on + strand, within BWI76_RS19415 at 4049.835 kb on - strand, within BWI76_RS19415 at 4049.844 kb on - strand, within BWI76_RS19415 at 4049.844 kb on - strand, within BWI76_RS19415 at 4049.844 kb on - strand, within BWI76_RS19415 at 4049.857 kb on - strand, within BWI76_RS19415 at 4049.857 kb on - strand, within BWI76_RS19415 at 4049.895 kb on - strand at 4049.911 kb on - strand at 4049.938 kb on - strand at 4049.938 kb on - strand at 4049.938 kb on - strand at 4049.948 kb on - strand at 4049.948 kb on - strand at 4049.982 kb on + strand at 4049.985 kb on - strand at 4049.985 kb on - strand at 4049.990 kb on - strand at 4049.992 kb on - strand at 4049.993 kb on - strand at 4050.007 kb on + strand at 4050.057 kb on + strand at 4050.060 kb on - strand at 4050.065 kb on - strand at 4050.065 kb on - strand at 4050.065 kb on - strand at 4050.067 kb on + strand at 4050.067 kb on + strand at 4050.067 kb on + strand at 4050.067 kb on + strand at 4050.067 kb on + strand at 4050.067 kb on + strand at 4050.067 kb on + strand at 4050.067 kb on + strand at 4050.067 kb on + strand at 4050.075 kb on - strand at 4050.075 kb on - strand at 4050.075 kb on - strand at 4050.075 kb on - strand at 4050.075 kb on - strand at 4050.080 kb on - strand at 4050.080 kb on - strand at 4050.089 kb on + strand at 4050.097 kb on - strand at 4050.097 kb on - strand at 4050.132 kb on - strand at 4050.135 kb on + strand at 4050.135 kb on + strand at 4050.135 kb on + strand at 4050.187 kb on - strand at 4050.246 kb on - strand at 4050.246 kb on - strand at 4050.253 kb on - strand at 4050.253 kb on - strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.255 kb on + strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.263 kb on - strand at 4050.275 kb on - strand at 4050.320 kb on + strand at 4050.396 kb on - strand, within BWI76_RS19420 at 4050.439 kb on - strand, within BWI76_RS19420 at 4050.514 kb on + strand, within BWI76_RS19420 at 4050.641 kb on + strand, within BWI76_RS19420 at 4050.752 kb on - strand, within BWI76_RS19420 at 4050.757 kb on - strand, within BWI76_RS19420 at 4050.797 kb on + strand, within BWI76_RS19420 at 4050.805 kb on - strand, within BWI76_RS19420
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 4,048,842 + BWI76_RS19405 0.78 +0.6 4,049,049 + -1.5 4,049,113 - -0.7 4,049,118 + +0.3 4,049,250 + BWI76_RS19410 0.10 +1.9 4,049,250 + BWI76_RS19410 0.10 +0.8 4,049,250 + BWI76_RS19410 0.10 -0.1 4,049,250 + BWI76_RS19410 0.10 -0.1 4,049,250 + BWI76_RS19410 0.10 +0.4 4,049,258 - BWI76_RS19410 0.13 -0.6 4,049,258 - BWI76_RS19410 0.13 +1.0 4,049,258 - BWI76_RS19410 0.13 -1.7 4,049,258 - BWI76_RS19410 0.13 +0.6 4,049,258 - BWI76_RS19410 0.13 +2.0 4,049,261 + BWI76_RS19410 0.14 +0.1 4,049,273 - BWI76_RS19410 0.18 -1.7 4,049,289 - BWI76_RS19410 0.23 -2.2 4,049,374 - BWI76_RS19410 0.49 +1.1 4,049,411 - BWI76_RS19410 0.61 -0.0 4,049,422 + BWI76_RS19410 0.64 -0.3 4,049,447 - BWI76_RS19410 0.72 -0.7 4,049,453 - BWI76_RS19410 0.74 -3.2 4,049,460 + +2.1 4,049,461 + BWI76_RS19410 0.77 +0.1 4,049,466 + BWI76_RS19410 0.78 -0.8 4,049,535 + -0.4 4,049,553 - +0.9 4,049,555 + -1.1 4,049,558 - -2.2 4,049,559 - +0.4 4,049,594 - -1.3 4,049,594 - +0.3 4,049,594 - +0.7 4,049,650 - BWI76_RS19415 0.17 +0.4 4,049,650 - BWI76_RS19415 0.17 +0.0 4,049,665 + BWI76_RS19415 0.22 +0.3 4,049,673 - BWI76_RS19415 0.24 +0.2 4,049,719 - BWI76_RS19415 0.38 -1.1 4,049,729 + BWI76_RS19415 0.41 -0.4 4,049,785 - BWI76_RS19415 0.58 -0.2 4,049,787 - BWI76_RS19415 0.58 -1.1 4,049,787 - BWI76_RS19415 0.58 +0.6 4,049,813 - BWI76_RS19415 0.66 +0.2 4,049,826 - +0.9 4,049,827 + BWI76_RS19415 0.71 -1.4 4,049,828 + BWI76_RS19415 0.71 +2.9 4,049,835 - BWI76_RS19415 0.73 -1.9 4,049,844 - BWI76_RS19415 0.76 -2.3 4,049,844 - BWI76_RS19415 0.76 -1.6 4,049,844 - BWI76_RS19415 0.76 -0.6 4,049,857 - BWI76_RS19415 0.80 -0.1 4,049,857 - BWI76_RS19415 0.80 +0.1 4,049,895 - +0.2 4,049,911 - -2.4 4,049,938 - +0.9 4,049,938 - +1.3 4,049,938 - +0.1 4,049,948 - +0.4 4,049,948 - +0.3 4,049,982 + +0.2 4,049,985 - -0.3 4,049,985 - -2.0 4,049,990 - +0.3 4,049,992 - +0.3 4,049,993 - -1.1 4,050,007 + +0.9 4,050,057 + +0.5 4,050,060 - -0.7 4,050,065 - +0.2 4,050,065 - -1.4 4,050,065 - +1.8 4,050,067 + -0.1 4,050,067 + -1.8 4,050,067 + -0.6 4,050,067 + -0.3 4,050,067 + -0.5 4,050,067 + +0.8 4,050,067 + +1.0 4,050,067 + +0.1 4,050,067 + +0.5 4,050,075 - -0.5 4,050,075 - +0.6 4,050,075 - +0.1 4,050,075 - +0.9 4,050,075 - -0.6 4,050,080 - -0.1 4,050,080 - -1.2 4,050,089 + -0.4 4,050,097 - +0.9 4,050,097 - -0.7 4,050,132 - -1.4 4,050,135 + -2.0 4,050,135 + +0.9 4,050,135 + +0.3 4,050,187 - +0.6 4,050,246 - -0.2 4,050,246 - +2.9 4,050,253 - +0.2 4,050,253 - -1.9 4,050,255 + +0.6 4,050,255 + +0.0 4,050,255 + -1.4 4,050,255 + +0.1 4,050,255 + +1.9 4,050,255 + +0.1 4,050,255 + +1.3 4,050,255 + +0.0 4,050,255 + +0.7 4,050,255 + +0.3 4,050,255 + +0.4 4,050,255 + +0.2 4,050,255 + -0.2 4,050,255 + +0.2 4,050,255 + +1.6 4,050,263 - +4.9 4,050,263 - -0.7 4,050,263 - -0.3 4,050,263 - +0.6 4,050,263 - +1.9 4,050,263 - +4.8 4,050,263 - -0.7 4,050,263 - +0.6 4,050,263 - -2.3 4,050,263 - -0.6 4,050,263 - -0.0 4,050,263 - -0.2 4,050,263 - -0.7 4,050,263 - +0.3 4,050,263 - +2.9 4,050,263 - -0.1 4,050,263 - +0.2 4,050,275 - -0.1 4,050,320 + -0.8 4,050,396 - BWI76_RS19420 0.11 -0.7 4,050,439 - BWI76_RS19420 0.15 -0.7 4,050,514 + BWI76_RS19420 0.22 -0.2 4,050,641 + BWI76_RS19420 0.33 +0.6 4,050,752 - BWI76_RS19420 0.43 -0.8 4,050,757 - BWI76_RS19420 0.44 -0.6 4,050,797 + BWI76_RS19420 0.47 -1.1 4,050,805 - BWI76_RS19420 0.48 -1.1
Or see this region's nucleotide sequence