Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16410

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16405 and BWI76_RS16410 are separated by 253 nucleotidesBWI76_RS16410 and BWI76_RS16415 are separated by 57 nucleotidesBWI76_RS16415 and BWI76_RS16420 are separated by 92 nucleotides BWI76_RS16405: BWI76_RS16405 - tyrosine--tRNA ligase, at 3,403,623 to 3,404,897 _RS16405 BWI76_RS16410: BWI76_RS16410 - pyridoxamine 5'-phosphate oxidase, at 3,405,151 to 3,405,807 _RS16410 BWI76_RS16415: BWI76_RS16415 - lysozyme inhibitor, at 3,405,865 to 3,406,188 _RS16415 BWI76_RS16420: BWI76_RS16420 - anhydro-N-acetylmuramic acid kinase, at 3,406,281 to 3,407,405 _RS16420 Position (kb) 3405 3406Strain fitness (log2 ratio) -1 0 1at 3406.229 kb on - strandat 3406.593 kb on + strand, within BWI76_RS16420

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
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3,406,229 - +1.0
3,406,593 + BWI76_RS16420 0.28 +0.1

Or see this region's nucleotide sequence