Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15255 and BWI76_RS15260 overlap by 4 nucleotides BWI76_RS15260 and BWI76_RS15265 are separated by 19 nucleotides BWI76_RS15265 and BWI76_RS15270 are separated by 142 nucleotides BWI76_RS15270 and BWI76_RS15275 are separated by 9 nucleotides
BWI76_RS15255: BWI76_RS15255 - hypothetical protein, at 3,197,158 to 3,198,330
_RS15255
BWI76_RS15260: BWI76_RS15260 - hypothetical protein, at 3,198,327 to 3,198,797
_RS15260
BWI76_RS15265: BWI76_RS15265 - hypothetical protein, at 3,198,817 to 3,200,097
_RS15265
BWI76_RS15270: BWI76_RS15270 - phenazine biosynthesis protein PhzF family, at 3,200,240 to 3,201,028
_RS15270
BWI76_RS15275: BWI76_RS15275 - isomerase, at 3,201,038 to 3,201,829
_RS15275
Position (kb)
3198
3199
3200
3201 Strain fitness (log2 ratio)
-1
0
1
2 at 3198.582 kb on + strand, within BWI76_RS15260 at 3199.228 kb on - strand, within BWI76_RS15265 at 3199.362 kb on + strand, within BWI76_RS15265 at 3199.771 kb on + strand, within BWI76_RS15265 at 3199.810 kb on + strand, within BWI76_RS15265 at 3199.825 kb on + strand, within BWI76_RS15265 at 3199.860 kb on - strand, within BWI76_RS15265 at 3199.892 kb on + strand, within BWI76_RS15265 at 3199.906 kb on - strand, within BWI76_RS15265 at 3200.165 kb on + strand at 3200.241 kb on - strand at 3200.246 kb on - strand at 3200.246 kb on - strand at 3200.653 kb on + strand, within BWI76_RS15270 at 3200.875 kb on + strand, within BWI76_RS15270 at 3200.896 kb on + strand, within BWI76_RS15270
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 3,198,582 + BWI76_RS15260 0.54 +0.4 3,199,228 - BWI76_RS15265 0.32 +0.2 3,199,362 + BWI76_RS15265 0.43 +1.5 3,199,771 + BWI76_RS15265 0.74 +0.7 3,199,810 + BWI76_RS15265 0.78 +1.9 3,199,825 + BWI76_RS15265 0.79 -0.9 3,199,860 - BWI76_RS15265 0.81 -0.6 3,199,892 + BWI76_RS15265 0.84 +0.7 3,199,906 - BWI76_RS15265 0.85 +0.4 3,200,165 + +1.6 3,200,241 - +0.5 3,200,246 - -0.8 3,200,246 - +0.2 3,200,653 + BWI76_RS15270 0.52 +0.8 3,200,875 + BWI76_RS15270 0.80 +0.6 3,200,896 + BWI76_RS15270 0.83 +0.9
Or see this region's nucleotide sequence