Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11500 and BWI76_RS11505 are separated by 74 nucleotides BWI76_RS11505 and BWI76_RS11510 overlap by 47 nucleotides BWI76_RS11510 and BWI76_RS11515 are separated by 188 nucleotides BWI76_RS11515 and BWI76_RS11520 are separated by 42 nucleotides
BWI76_RS11500: BWI76_RS11500 - D-hexose-6-phosphate mutarotase, at 2,421,524 to 2,422,408
_RS11500
BWI76_RS11505: BWI76_RS11505 - aldehyde dehydrogenase, at 2,422,483 to 2,423,478
_RS11505
BWI76_RS11510: BWI76_RS11510 - hypothetical protein, at 2,423,432 to 2,423,628
_RS11510
BWI76_RS11515: BWI76_RS11515 - peptide-methionine (R)-S-oxide reductase, at 2,423,817 to 2,424,230
_RS11515
BWI76_RS11520: BWI76_RS11520 - hypothetical protein, at 2,424,273 to 2,424,548
_RS11520
Position (kb)
2422
2423
2424 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2421.502 kb on - strand at 2421.502 kb on - strand at 2421.544 kb on + strand at 2421.553 kb on - strand at 2421.881 kb on - strand, within BWI76_RS11500 at 2421.982 kb on + strand, within BWI76_RS11500 at 2422.022 kb on - strand, within BWI76_RS11500 at 2422.106 kb on - strand, within BWI76_RS11500 at 2422.263 kb on - strand, within BWI76_RS11500 at 2422.362 kb on + strand at 2422.370 kb on - strand at 2423.731 kb on + strand at 2423.841 kb on - strand at 2423.870 kb on + strand, within BWI76_RS11515 at 2423.901 kb on - strand, within BWI76_RS11515 at 2424.443 kb on + strand, within BWI76_RS11520
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 2,421,502 - -0.3 2,421,502 - -1.2 2,421,544 + -0.6 2,421,553 - +2.5 2,421,881 - BWI76_RS11500 0.40 +0.9 2,421,982 + BWI76_RS11500 0.52 +0.9 2,422,022 - BWI76_RS11500 0.56 +0.4 2,422,106 - BWI76_RS11500 0.66 -2.7 2,422,263 - BWI76_RS11500 0.84 +0.6 2,422,362 + +0.6 2,422,370 - -0.4 2,423,731 + +0.3 2,423,841 - -0.5 2,423,870 + BWI76_RS11515 0.13 +1.2 2,423,901 - BWI76_RS11515 0.20 -0.3 2,424,443 + BWI76_RS11520 0.62 -0.2
Or see this region's nucleotide sequence