Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10470 and BWI76_RS10475 are separated by 23 nucleotides BWI76_RS10475 and BWI76_RS10480 are separated by 0 nucleotides
BWI76_RS10470: BWI76_RS10470 - iron ABC transporter substrate-binding protein, at 2,211,755 to 2,212,771
_RS10470
BWI76_RS10475: BWI76_RS10475 - binding-protein-dependent transport system inner membrane protein, at 2,212,795 to 2,214,369
_RS10475
BWI76_RS10480: BWI76_RS10480 - amino acid ABC transporter substrate-binding protein, at 2,214,370 to 2,215,398
_RS10480
Position (kb)
2212
2213
2214
2215 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2211.929 kb on - strand, within BWI76_RS10470 at 2211.937 kb on + strand, within BWI76_RS10470 at 2211.945 kb on - strand, within BWI76_RS10470 at 2212.080 kb on + strand, within BWI76_RS10470 at 2212.687 kb on + strand at 2212.801 kb on + strand at 2212.889 kb on + strand at 2213.006 kb on + strand, within BWI76_RS10475 at 2213.299 kb on + strand, within BWI76_RS10475 at 2213.357 kb on - strand, within BWI76_RS10475 at 2213.968 kb on - strand, within BWI76_RS10475 at 2214.160 kb on + strand, within BWI76_RS10475 at 2214.242 kb on + strand at 2214.616 kb on + strand, within BWI76_RS10480 at 2214.725 kb on + strand, within BWI76_RS10480 at 2214.753 kb on + strand, within BWI76_RS10480 at 2214.787 kb on - strand, within BWI76_RS10480 at 2214.854 kb on - strand, within BWI76_RS10480 at 2214.915 kb on + strand, within BWI76_RS10480 at 2214.923 kb on - strand, within BWI76_RS10480 at 2214.941 kb on + strand, within BWI76_RS10480 at 2214.978 kb on + strand, within BWI76_RS10480 at 2215.011 kb on + strand, within BWI76_RS10480 at 2215.029 kb on + strand, within BWI76_RS10480 at 2215.037 kb on - strand, within BWI76_RS10480 at 2215.037 kb on - strand at 2215.197 kb on + strand, within BWI76_RS10480 at 2215.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 2,211,929 - BWI76_RS10470 0.17 -0.6 2,211,937 + BWI76_RS10470 0.18 -1.0 2,211,945 - BWI76_RS10470 0.19 -0.1 2,212,080 + BWI76_RS10470 0.32 +0.9 2,212,687 + -0.7 2,212,801 + -1.0 2,212,889 + -0.3 2,213,006 + BWI76_RS10475 0.13 -1.3 2,213,299 + BWI76_RS10475 0.32 -0.6 2,213,357 - BWI76_RS10475 0.36 -1.3 2,213,968 - BWI76_RS10475 0.74 -1.5 2,214,160 + BWI76_RS10475 0.87 -1.6 2,214,242 + -0.3 2,214,616 + BWI76_RS10480 0.24 +0.1 2,214,725 + BWI76_RS10480 0.34 -0.6 2,214,753 + BWI76_RS10480 0.37 -2.4 2,214,787 - BWI76_RS10480 0.41 -0.2 2,214,854 - BWI76_RS10480 0.47 +0.5 2,214,915 + BWI76_RS10480 0.53 -0.5 2,214,923 - BWI76_RS10480 0.54 -0.8 2,214,941 + BWI76_RS10480 0.55 -0.5 2,214,978 + BWI76_RS10480 0.59 -1.0 2,215,011 + BWI76_RS10480 0.62 -1.2 2,215,029 + BWI76_RS10480 0.64 -1.4 2,215,037 - BWI76_RS10480 0.65 -3.5 2,215,037 - +0.0 2,215,197 + BWI76_RS10480 0.80 -0.8 2,215,358 + -0.9
Or see this region's nucleotide sequence