Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06040 and BWI76_RS06045 are separated by 69 nucleotides BWI76_RS06045 and BWI76_RS06050 overlap by 1 nucleotides
BWI76_RS06040: BWI76_RS06040 - iron ABC transporter permease, at 1,267,910 to 1,269,988
_RS06040
BWI76_RS06045: BWI76_RS06045 - hypothetical protein, at 1,270,058 to 1,271,089
_RS06045
BWI76_RS06050: BWI76_RS06050 - MFS transporter family glucose-6-phosphate receptor UhpC, at 1,271,089 to 1,272,390
_RS06050
Position (kb)
1270
1271
1272 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1269.059 kb on - strand, within BWI76_RS06040 at 1269.195 kb on - strand, within BWI76_RS06040 at 1269.208 kb on + strand, within BWI76_RS06040 at 1269.235 kb on + strand, within BWI76_RS06040 at 1269.429 kb on + strand, within BWI76_RS06040 at 1269.533 kb on + strand, within BWI76_RS06040 at 1269.748 kb on + strand, within BWI76_RS06040 at 1269.760 kb on + strand, within BWI76_RS06040 at 1269.833 kb on + strand at 1269.841 kb on - strand at 1269.841 kb on - strand at 1269.968 kb on + strand at 1270.009 kb on - strand at 1270.102 kb on - strand at 1270.158 kb on - strand at 1270.158 kb on - strand at 1270.560 kb on + strand, within BWI76_RS06045 at 1270.568 kb on - strand, within BWI76_RS06045 at 1270.625 kb on - strand, within BWI76_RS06045 at 1270.721 kb on - strand, within BWI76_RS06045 at 1270.736 kb on - strand, within BWI76_RS06045 at 1270.892 kb on - strand, within BWI76_RS06045 at 1271.579 kb on + strand, within BWI76_RS06050 at 1271.579 kb on - strand, within BWI76_RS06050 at 1271.608 kb on - strand, within BWI76_RS06050 at 1271.804 kb on + strand, within BWI76_RS06050 at 1271.951 kb on - strand at 1271.990 kb on - strand, within BWI76_RS06050 at 1272.008 kb on + strand, within BWI76_RS06050
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 1,269,059 - BWI76_RS06040 0.55 -0.7 1,269,195 - BWI76_RS06040 0.62 +0.4 1,269,208 + BWI76_RS06040 0.62 +0.9 1,269,235 + BWI76_RS06040 0.64 +0.7 1,269,429 + BWI76_RS06040 0.73 +0.3 1,269,533 + BWI76_RS06040 0.78 +0.4 1,269,748 + BWI76_RS06040 0.88 -0.4 1,269,760 + BWI76_RS06040 0.89 +1.9 1,269,833 + -0.7 1,269,841 - +0.6 1,269,841 - -1.8 1,269,968 + +0.7 1,270,009 - +0.4 1,270,102 - +0.7 1,270,158 - +0.0 1,270,158 - +0.0 1,270,560 + BWI76_RS06045 0.49 -0.3 1,270,568 - BWI76_RS06045 0.49 +0.4 1,270,625 - BWI76_RS06045 0.55 +0.0 1,270,721 - BWI76_RS06045 0.64 +0.4 1,270,736 - BWI76_RS06045 0.66 -0.5 1,270,892 - BWI76_RS06045 0.81 +0.2 1,271,579 + BWI76_RS06050 0.38 -0.1 1,271,579 - BWI76_RS06050 0.38 +0.2 1,271,608 - BWI76_RS06050 0.40 -0.8 1,271,804 + BWI76_RS06050 0.55 +0.8 1,271,951 - +2.7 1,271,990 - BWI76_RS06050 0.69 -1.1 1,272,008 + BWI76_RS06050 0.71 +1.4
Or see this region's nucleotide sequence