Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04205

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS04195 and BWI76_RS04200 are separated by 114 nucleotidesBWI76_RS04200 and BWI76_RS04205 overlap by 4 nucleotidesBWI76_RS04205 and BWI76_RS04210 are separated by 209 nucleotidesBWI76_RS04210 and BWI76_RS04215 are separated by 12 nucleotides BWI76_RS04195: BWI76_RS04195 - non-canonical purine NTP phosphatase, at 863,697 to 864,218 _RS04195 BWI76_RS04200: BWI76_RS04200 - phosphoglycerate mutase GpmB, at 864,333 to 864,980 _RS04200 BWI76_RS04205: BWI76_RS04205 - right oriC-binding transcriptional activator, at 864,977 to 865,846 _RS04205 BWI76_RS04210: BWI76_RS04210 - hypothetical protein, at 866,056 to 866,529 _RS04210 BWI76_RS04215: BWI76_RS04215 - DNA-binding response regulator, at 866,542 to 867,231 _RS04215 Position (kb) 864 865 866Strain fitness (log2 ratio) -2 -1 0 1 2at 864.304 kb on + strandat 864.305 kb on - strandat 864.313 kb on - strandat 864.581 kb on + strand, within BWI76_RS04200at 864.589 kb on - strand, within BWI76_RS04200at 864.892 kb on + strand, within BWI76_RS04200at 865.206 kb on + strand, within BWI76_RS04205at 865.409 kb on + strand, within BWI76_RS04205at 865.410 kb on + strand, within BWI76_RS04205at 865.416 kb on - strand, within BWI76_RS04205at 865.420 kb on + strand, within BWI76_RS04205at 865.435 kb on + strand, within BWI76_RS04205at 865.538 kb on + strand, within BWI76_RS04205at 865.551 kb on - strand, within BWI76_RS04205at 865.653 kb on - strand, within BWI76_RS04205at 865.759 kb on - strand, within BWI76_RS04205at 865.767 kb on + strandat 865.800 kb on + strandat 865.809 kb on + strandat 865.811 kb on + strandat 865.811 kb on + strandat 865.811 kb on + strandat 865.811 kb on + strandat 865.811 kb on + strandat 865.811 kb on + strandat 865.811 kb on + strandat 865.819 kb on - strandat 865.819 kb on - strandat 865.819 kb on - strandat 865.819 kb on - strandat 865.819 kb on - strandat 865.859 kb on + strandat 865.859 kb on + strandat 865.859 kb on + strandat 865.866 kb on + strandat 866.247 kb on + strand, within BWI76_RS04210at 866.258 kb on + strand, within BWI76_RS04210at 866.279 kb on + strand, within BWI76_RS04210at 866.279 kb on + strand, within BWI76_RS04210at 866.287 kb on - strand, within BWI76_RS04210at 866.551 kb on + strandat 866.598 kb on + strandat 866.606 kb on - strandat 866.606 kb on - strandat 866.734 kb on - strand, within BWI76_RS04215at 866.786 kb on - strand, within BWI76_RS04215at 866.786 kb on - strand, within BWI76_RS04215at 866.803 kb on - strand, within BWI76_RS04215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
remove
864,304 + +0.9
864,305 - -0.1
864,313 - +1.9
864,581 + BWI76_RS04200 0.38 +0.8
864,589 - BWI76_RS04200 0.40 -0.7
864,892 + BWI76_RS04200 0.86 +0.4
865,206 + BWI76_RS04205 0.26 +0.6
865,409 + BWI76_RS04205 0.50 +0.1
865,410 + BWI76_RS04205 0.50 +1.9
865,416 - BWI76_RS04205 0.50 +1.1
865,420 + BWI76_RS04205 0.51 -1.0
865,435 + BWI76_RS04205 0.53 +0.0
865,538 + BWI76_RS04205 0.64 +0.4
865,551 - BWI76_RS04205 0.66 -1.3
865,653 - BWI76_RS04205 0.78 +1.1
865,759 - BWI76_RS04205 0.90 +0.9
865,767 + +0.1
865,800 + +0.2
865,809 + +0.8
865,811 + +0.7
865,811 + -2.4
865,811 + -1.9
865,811 + -0.1
865,811 + -1.2
865,811 + -0.2
865,811 + -0.9
865,819 - -0.4
865,819 - +0.7
865,819 - +0.9
865,819 - +0.9
865,819 - -2.4
865,859 + -1.4
865,859 + +1.2
865,859 + +0.3
865,866 + +0.1
866,247 + BWI76_RS04210 0.40 -1.4
866,258 + BWI76_RS04210 0.43 +0.3
866,279 + BWI76_RS04210 0.47 +0.3
866,279 + BWI76_RS04210 0.47 -0.0
866,287 - BWI76_RS04210 0.49 +0.7
866,551 + -1.0
866,598 + +0.9
866,606 - -0.2
866,606 - -0.7
866,734 - BWI76_RS04215 0.28 -0.9
866,786 - BWI76_RS04215 0.35 +2.1
866,786 - BWI76_RS04215 0.35 +0.8
866,803 - BWI76_RS04215 0.38 -0.9

Or see this region's nucleotide sequence