Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01125

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS01120 and BWI76_RS01125 overlap by 4 nucleotidesBWI76_RS01125 and BWI76_RS01130 overlap by 4 nucleotides BWI76_RS01120: BWI76_RS01120 - O-antigen translocase, at 230,576 to 231,826 _RS01120 BWI76_RS01125: BWI76_RS01125 - 4-alpha-L-fucosyltransferase, at 231,823 to 232,902 _RS01125 BWI76_RS01130: BWI76_RS01130 - enterobacterial common antigen polymerase, at 232,899 to 234,245 _RS01130 Position (kb) 231 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1at 230.926 kb on - strand, within BWI76_RS01120at 230.953 kb on + strand, within BWI76_RS01120at 230.953 kb on + strand, within BWI76_RS01120at 231.208 kb on + strand, within BWI76_RS01120at 231.388 kb on + strand, within BWI76_RS01120at 231.410 kb on + strand, within BWI76_RS01120at 231.627 kb on - strand, within BWI76_RS01120at 231.640 kb on + strand, within BWI76_RS01120at 231.739 kb on - strandat 231.759 kb on - strandat 231.759 kb on - strandat 231.787 kb on + strandat 231.795 kb on - strandat 231.824 kb on + strandat 231.832 kb on - strandat 231.877 kb on + strandat 231.898 kb on + strandat 232.139 kb on - strand, within BWI76_RS01125at 232.219 kb on - strand, within BWI76_RS01125at 232.534 kb on + strand, within BWI76_RS01125at 232.534 kb on + strand, within BWI76_RS01125at 232.534 kb on + strand, within BWI76_RS01125at 232.542 kb on - strand, within BWI76_RS01125at 232.712 kb on - strand, within BWI76_RS01125at 232.727 kb on + strand, within BWI76_RS01125at 232.768 kb on + strand, within BWI76_RS01125at 232.795 kb on - strandat 232.839 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
remove
230,926 - BWI76_RS01120 0.28 -1.7
230,953 + BWI76_RS01120 0.30 -1.1
230,953 + BWI76_RS01120 0.30 -2.2
231,208 + BWI76_RS01120 0.51 -0.6
231,388 + BWI76_RS01120 0.65 -0.4
231,410 + BWI76_RS01120 0.67 +1.1
231,627 - BWI76_RS01120 0.84 -1.6
231,640 + BWI76_RS01120 0.85 -0.7
231,739 - -0.5
231,759 - +0.3
231,759 - -1.2
231,787 + +0.1
231,795 - -1.3
231,824 + -0.9
231,832 - -0.9
231,877 + -0.5
231,898 + -1.5
232,139 - BWI76_RS01125 0.29 -0.9
232,219 - BWI76_RS01125 0.37 -3.4
232,534 + BWI76_RS01125 0.66 -2.5
232,534 + BWI76_RS01125 0.66 -0.5
232,534 + BWI76_RS01125 0.66 +0.1
232,542 - BWI76_RS01125 0.67 -2.9
232,712 - BWI76_RS01125 0.82 -0.5
232,727 + BWI76_RS01125 0.84 -2.3
232,768 + BWI76_RS01125 0.88 -2.6
232,795 - -0.5
232,839 - -3.3

Or see this region's nucleotide sequence