Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00845 and BWI76_RS00850 are separated by 9 nucleotides BWI76_RS00850 and BWI76_RS00855 are separated by 77 nucleotides
BWI76_RS00845: BWI76_RS00845 - N-acetyl-gamma-glutamyl-phosphate reductase, at 174,921 to 175,925
_RS00845
BWI76_RS00850: BWI76_RS00850 - acetylglutamate kinase, at 175,935 to 176,708
_RS00850
BWI76_RS00855: BWI76_RS00855 - argininosuccinate lyase, at 176,786 to 178,159
_RS00855
Position (kb) 175
176
177 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 174.966 kb on + strand at 174.996 kb on + strand at 175.207 kb on + strand, within BWI76_RS00845 at 175.291 kb on + strand, within BWI76_RS00845 at 175.291 kb on + strand, within BWI76_RS00845 at 175.329 kb on - strand, within BWI76_RS00845 at 175.483 kb on - strand, within BWI76_RS00845 at 175.498 kb on - strand, within BWI76_RS00845 at 175.593 kb on + strand, within BWI76_RS00845 at 175.709 kb on - strand, within BWI76_RS00845 at 175.714 kb on - strand, within BWI76_RS00845 at 175.739 kb on + strand, within BWI76_RS00845 at 175.775 kb on - strand, within BWI76_RS00845 at 175.803 kb on + strand, within BWI76_RS00845 at 175.825 kb on - strand at 176.129 kb on + strand, within BWI76_RS00850 at 176.171 kb on + strand, within BWI76_RS00850 at 176.235 kb on - strand, within BWI76_RS00850 at 176.263 kb on + strand, within BWI76_RS00850 at 176.350 kb on + strand, within BWI76_RS00850 at 176.350 kb on + strand, within BWI76_RS00850 at 176.358 kb on - strand, within BWI76_RS00850 at 176.583 kb on - strand, within BWI76_RS00850 at 176.612 kb on - strand, within BWI76_RS00850 at 176.652 kb on + strand at 176.655 kb on - strand at 176.669 kb on + strand at 176.669 kb on + strand at 176.737 kb on + strand at 176.861 kb on + strand at 176.876 kb on + strand at 176.917 kb on + strand at 176.966 kb on + strand, within BWI76_RS00855 at 176.994 kb on + strand, within BWI76_RS00855 at 177.129 kb on - strand, within BWI76_RS00855 at 177.132 kb on + strand, within BWI76_RS00855 at 177.164 kb on + strand, within BWI76_RS00855 at 177.231 kb on + strand, within BWI76_RS00855 at 177.375 kb on + strand, within BWI76_RS00855 at 177.458 kb on + strand, within BWI76_RS00855 at 177.466 kb on - strand, within BWI76_RS00855 at 177.598 kb on + strand, within BWI76_RS00855
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 174,966 + -3.2 174,996 + -3.3 175,207 + BWI76_RS00845 0.28 -4.4 175,291 + BWI76_RS00845 0.37 -4.9 175,291 + BWI76_RS00845 0.37 +1.1 175,329 - BWI76_RS00845 0.41 -2.8 175,483 - BWI76_RS00845 0.56 -5.2 175,498 - BWI76_RS00845 0.57 -1.1 175,593 + BWI76_RS00845 0.67 -4.5 175,709 - BWI76_RS00845 0.78 -1.9 175,714 - BWI76_RS00845 0.79 -4.3 175,739 + BWI76_RS00845 0.81 -1.9 175,775 - BWI76_RS00845 0.85 -2.1 175,803 + BWI76_RS00845 0.88 -4.1 175,825 - -4.9 176,129 + BWI76_RS00850 0.25 -1.0 176,171 + BWI76_RS00850 0.30 -4.0 176,235 - BWI76_RS00850 0.39 -3.7 176,263 + BWI76_RS00850 0.42 -4.9 176,350 + BWI76_RS00850 0.54 -5.2 176,350 + BWI76_RS00850 0.54 -3.9 176,358 - BWI76_RS00850 0.55 -1.9 176,583 - BWI76_RS00850 0.84 -4.5 176,612 - BWI76_RS00850 0.87 -2.8 176,652 + -0.2 176,655 - -4.6 176,669 + -4.6 176,669 + -5.3 176,737 + -0.0 176,861 + -4.7 176,876 + -4.5 176,917 + -2.4 176,966 + BWI76_RS00855 0.13 -4.0 176,994 + BWI76_RS00855 0.15 -2.4 177,129 - BWI76_RS00855 0.25 -4.2 177,132 + BWI76_RS00855 0.25 -3.7 177,164 + BWI76_RS00855 0.28 -2.7 177,231 + BWI76_RS00855 0.32 -0.4 177,375 + BWI76_RS00855 0.43 -4.8 177,458 + BWI76_RS00855 0.49 -1.3 177,466 - BWI76_RS00855 0.49 -3.4 177,598 + BWI76_RS00855 0.59 -2.5
Or see this region's nucleotide sequence