Strain Fitness in Shewanella oneidensis MR-1 around SO2120

Experiment: LB anaerobic; ground control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB anaerobic; ground control
2,224,037	+		SO2119	0.42	-0.4
2,224,037	+		SO2119	0.42	-1.3
2,224,045	-		SO2119	0.42	+1.0
2,224,047	-		SO2119	0.42	+0.4
2,224,077	+		SO2119	0.44	-2.7
2,224,077	+		SO2119	0.44	+0.5
2,224,082	+		SO2119	0.44	+0.3
2,224,082	+		SO2119	0.44	-1.5
2,224,082	+		SO2119	0.44	+0.7
2,224,082	+		SO2119	0.44	+0.2
2,224,082	+		SO2119	0.44	+0.3
2,224,082	+		SO2119	0.44	+1.2
2,224,085	-		SO2119	0.44	+1.3
2,224,085	-		SO2119	0.44	-0.8
2,224,090	-		SO2119	0.45	+0.1
2,224,090	-		SO2119	0.45	-1.3
2,224,091	+		SO2119	0.45	+1.1
2,224,099	-		SO2119	0.45	+1.1
2,224,102	-		SO2119	0.45	-0.3
2,224,131	+		SO2119	0.47	+0.3
2,224,137	-		SO2119	0.47	-0.1
2,224,137	-		SO2119	0.47	-0.8
2,224,137	-		SO2119	0.47	-1.6
2,224,144	+		SO2119	0.48	+0.1
2,224,145	-		SO2119	0.48	-0.9
2,224,148	-		SO2119	0.48	-2.3
2,224,152	+		SO2119	0.48	-0.6
2,224,152	+		SO2119	0.48	+0.8
2,224,152	-		SO2119	0.48	+0.7
2,224,159	+		SO2119	0.49	-0.5
2,224,159	+		SO2119	0.49	+1.1
2,224,159	+		SO2119	0.49	+1.3
2,224,161	-		SO2119	0.49	+1.0
2,224,161	-		SO2119	0.49	-1.9
2,224,161	-		SO2119	0.49	-2.1
2,224,161	-		SO2119	0.49	+0.1
2,224,167	-		SO2119	0.49	-0.8
2,224,171	-		SO2119	0.49	-1.1
2,224,171	-		SO2119	0.49	+0.1
2,224,171	-		SO2119	0.49	+2.3
2,224,174	+		SO2119	0.50	-0.3
2,224,174	+		SO2119	0.50	-0.1
2,224,174	+		SO2119	0.50	+0.9
2,224,174	+		SO2119	0.50	-2.1
2,224,174	+		SO2119	0.50	+0.4
2,224,174	+		SO2119	0.50	-0.6
2,224,174	+		SO2119	0.50	-0.7
2,224,174	+		SO2119	0.50	+0.1
2,224,174	+		SO2119	0.50	+0.4
2,224,174	+		SO2119	0.50	+1.9
2,224,174	+		SO2119	0.50	-0.2
2,224,174	+		SO2119	0.50	-0.5
2,224,174	+		SO2119	0.50	+1.1
2,224,174	+		SO2119	0.50	-2.3
2,224,174	+		SO2119	0.50	+0.1
2,224,174	+		SO2119	0.50	-0.3
2,224,174	+		SO2119	0.50	-0.2
2,224,174	+		SO2119	0.50	-0.4
2,224,174	+		SO2119	0.50	+0.3
2,224,174	+		SO2119	0.50	+0.7
2,224,175	-		SO2119	0.50	+0.0
2,224,182	-		SO2119	0.50	-0.5
2,224,182	-		SO2119	0.50	-1.5
2,224,182	-		SO2119	0.50	+0.2
2,224,182	-		SO2119	0.50	-0.7
2,224,182	-		SO2119	0.50	-0.9
2,224,182	-		SO2119	0.50	-2.3
2,224,182	-		SO2119	0.50	-0.2
2,224,182	-		SO2119	0.50	+1.5
2,224,182	-		SO2119	0.50	-1.3
2,224,183	-		SO2119	0.50	+1.2
2,224,196	-		SO2119	0.51	-0.1
2,224,198	-		SO2119	0.51	+0.4
2,224,215	-		SO2119	0.52	-2.5
2,224,219	+		SO2119	0.52	+1.0
2,224,219	+		SO2119	0.52	-2.1
2,224,230	+		SO2119	0.53	-0.7
2,224,230	+		SO2119	0.53	-0.6
2,224,231	+		SO2119	0.53	-1.7
2,224,240	+		SO2119	0.54	-0.4
2,224,243	-		SO2119	0.54	-2.1
2,224,243	-		SO2119	0.54	+0.4
2,224,299	-		SO2119	0.57	-0.8
2,224,300	+		SO2119	0.57	+0.5
2,224,306	+		SO2119	0.57	+0.6
2,224,309	-		SO2119	0.58	+2.2
2,224,314	-		SO2119	0.58	-2.9
2,224,323	-		SO2119	0.58	+1.1
2,224,325	+		SO2119	0.59	-0.3
2,224,344	+		SO2119	0.60	-1.7
2,224,348	+		SO2119	0.60	+0.1
2,224,348	+		SO2119	0.60	-0.6
2,224,348	+		SO2119	0.60	-0.6
2,224,356	-		SO2119	0.60	-2.8
2,224,379	+		SO2119	0.62	-1.7
2,224,379	+		SO2119	0.62	-0.6
2,224,382	-		SO2119	0.62	-0.5
2,224,498	-		SO2119	0.69	-0.3
2,224,498	-		SO2119	0.69	+0.5
2,224,503	+		SO2119	0.69	-2.5
2,224,505	-		SO2119	0.69	+0.0
2,224,510	+		SO2119	0.69	+2.3
2,224,547	+		SO2119	0.72	+0.1
2,224,555	-		SO2119	0.72	-0.5
2,224,586	+		SO2119	0.74	+0.7
2,224,591	+		SO2119	0.74	-0.3
2,224,633	-		SO2119	0.77	-1.1
2,224,635	+		SO2119	0.77	-2.5
2,224,643	-		SO2119	0.77	-0.5
2,224,645	+		SO2119	0.77	-0.9
2,224,645	+		SO2119	0.77	+0.8
2,224,691	+		SO2119	0.80	+0.9
2,224,693	+		SO2119	0.80	-0.9
2,224,693	+		SO2119	0.80	+0.2
2,224,701	-		SO2119	0.81	-0.3
2,224,718	+		SO2119	0.82	+0.3
2,224,718	+		SO2119	0.82	-0.9
2,224,718	+		SO2119	0.82	+0.4
2,224,718	+		SO2119	0.82	+3.0
2,224,718	+		SO2119	0.82	-2.8
2,224,718	+		SO2119	0.82	+0.3
2,224,718	+		SO2119	0.82	-1.6
2,224,718	+		SO2119	0.82	+2.2
2,224,718	+		SO2119	0.82	-1.3
2,224,718	+		SO2119	0.82	+0.2
2,224,718	+		SO2119	0.82	-1.5
2,224,718	+		SO2119	0.82	+0.2
2,224,718	+		SO2119	0.82	-0.5
2,224,718	+		SO2119	0.82	+1.0
2,224,718	+		SO2119	0.82	-0.0
2,224,718	+		SO2119	0.82	+0.6
2,224,718	+		SO2119	0.82	-0.5
2,224,718	+		SO2119	0.82	-0.9
2,224,718	+		SO2119	0.82	+0.8
2,224,718	+		SO2119	0.82	+1.1
2,224,718	+		SO2119	0.82	-0.2
2,224,724	-		SO2119	0.82	-2.5
2,224,726	-		SO2119	0.82	+0.1
2,224,726	-		SO2119	0.82	-2.8
2,224,726	-		SO2119	0.82	+1.0
2,224,726	-		SO2119	0.82	-0.7
2,224,726	-		SO2119	0.82	-0.7
2,224,726	-		SO2119	0.82	-0.3
2,224,726	-		SO2119	0.82	+0.7
2,224,726	-		SO2119	0.82	-0.8
2,224,726	-		SO2119	0.82	+1.1
2,224,728	+		SO2119	0.82	-0.3
2,224,736	-		SO2119	0.83	+0.3
2,224,765	+		SO2119	0.84	+0.7
2,224,766	+		SO2119	0.85	+0.3
2,224,766	+		SO2119	0.85	-0.8
2,224,774	-		SO2119	0.85	+0.7
2,224,776	+		SO2119	0.85	-2.2
2,224,782	+		SO2119	0.85	-0.2
2,224,784	+		SO2119	0.86	+0.1
2,224,784	+		SO2119	0.86	+1.1
2,224,784	+		SO2119	0.86	+1.3
2,224,784	+		SO2119	0.86	-0.2
2,224,784	+		SO2119	0.86	-0.3
2,224,784	+		SO2119	0.86	+0.1
2,224,784	+		SO2119	0.86	-0.9
2,224,784	+		SO2119	0.86	+0.4
2,224,784	+		SO2119	0.86	+1.8
2,224,784	+		SO2119	0.86	-0.0
2,224,784	+		SO2119	0.86	-1.3
2,224,784	+		SO2119	0.86	+0.2
2,224,784	+		SO2119	0.86	+1.0
2,224,784	-		SO2119	0.86	-0.3
2,224,784	-		SO2119	0.86	-1.1
2,224,792	-		SO2119	0.86	-0.0
2,224,792	-		SO2119	0.86	-0.3
2,224,792	-		SO2119	0.86	+0.7
2,224,792	-		SO2119	0.86	-0.2
2,224,792	-		SO2119	0.86	-0.2
2,224,792	-		SO2119	0.86	-0.3
2,224,792	-		SO2119	0.86	+1.1
2,224,792	-		SO2119	0.86	-2.2
2,224,792	-		SO2119	0.86	-0.7
2,224,792	-		SO2119	0.86	-0.8
2,224,792	-		SO2119	0.86	-0.6
2,224,794	+		SO2119	0.86	+0.3
2,224,794	+		SO2119	0.86	+0.4
2,224,796	+		SO2119	0.86	+1.8
2,224,796	+		SO2119	0.86	+0.4
2,224,796	+		SO2119	0.86	+1.2
2,224,796	+		SO2119	0.86	-2.5
2,224,802	-		SO2119	0.87	-0.7
2,224,804	-		SO2119	0.87	-0.9
2,224,804	-		SO2119	0.87	-0.6
2,224,804	-		SO2119	0.87	-3.9
2,224,804	-		SO2119	0.87	+1.1
2,224,804	-		SO2119	0.87	-1.9
2,224,804	-		SO2119	0.87	-1.1
2,224,809	+		SO2119	0.87	+0.5
2,224,814	+		SO2119	0.87	-0.1
2,224,814	-		SO2119	0.87	-1.7
2,224,814	-		SO2119	0.87	-0.6
2,224,817	-		SO2119	0.88	+1.2
2,224,817	-		SO2119	0.88	+1.2
2,224,826	+		SO2119	0.88	-0.0
2,224,826	+		SO2119	0.88	-0.9
2,224,826	+		SO2119	0.88	+1.5
2,224,826	+		SO2119	0.88	-1.2
2,224,834	-		SO2119	0.89	+0.2
2,224,834	-		SO2119	0.89	-0.9
2,224,843	+		SO2119	0.89	+0.6
2,224,843	+		SO2119	0.89	-1.1
2,224,843	+		SO2119	0.89	+0.7
2,224,843	+		SO2119	0.89	-1.2
2,224,843	+		SO2119	0.89	+1.3
2,224,843	+		SO2119	0.89	+2.1
2,224,843	+		SO2119	0.89	-0.7
2,224,843	+		SO2119	0.89	-1.3
2,224,843	+		SO2119	0.89	+0.2
2,224,843	+		SO2119	0.89	+0.2
2,224,843	+		SO2119	0.89	-0.8
2,224,843	+		SO2119	0.89	+0.2
2,224,843	+		SO2119	0.89	-1.6
2,224,843	+		SO2119	0.89	-0.9
2,224,843	+		SO2119	0.89	+0.2
2,224,843	+		SO2119	0.89	-0.4
2,224,843	+		SO2119	0.89	-0.6
2,224,843	+		SO2119	0.89	-0.5
2,224,843	+		SO2119	0.89	+0.1
2,224,843	+		SO2119	0.89	+1.4
2,224,843	+		SO2119	0.89	-0.7
2,224,843	+		SO2119	0.89	+0.4
2,224,843	+		SO2119	0.89	-2.2
2,224,843	+		SO2119	0.89	+0.4
2,224,843	+		SO2119	0.89	-1.1
2,224,843	+		SO2119	0.89	-1.6
2,224,843	+		SO2119	0.89	-0.4
2,224,843	+		SO2119	0.89	+0.8
2,224,843	+		SO2119	0.89	+1.6
2,224,843	+		SO2119	0.89	-1.0
2,224,843	+		SO2119	0.89	-0.8
2,224,843	+		SO2119	0.89	+1.5
2,224,843	+		SO2119	0.89	-1.9
2,224,843	+		SO2119	0.89	+0.5
2,224,843	+		SO2119	0.89	+2.2
2,224,843	+		SO2119	0.89	-1.3
2,224,843	+		SO2119	0.89	+1.3
2,224,843	+		SO2119	0.89	+0.8
2,224,843	+		SO2119	0.89	+0.1
2,224,843	+		SO2119	0.89	+0.3
2,224,843	+		SO2119	0.89	+0.8
2,224,843	+		SO2119	0.89	+0.4
2,224,843	+		SO2119	0.89	+0.4
2,224,843	+		SO2119	0.89	-0.1
2,224,843	+		SO2119	0.89	-0.0
2,224,843	+		SO2119	0.89	+0.3
2,224,843	+		SO2119	0.89	-0.3
2,224,843	+		SO2119	0.89	-2.6
2,224,843	+		SO2119	0.89	+0.5
2,224,843	+		SO2119	0.89	-1.2
2,224,844	+		SO2119	0.89	-0.9
2,224,844	+		SO2119	0.89	-0.9
2,224,844	-		SO2119	0.89	-0.2
2,224,851	+		SO2119	0.90	-2.7
2,224,851	-		SO2119	0.90	-1.6
2,224,851	-		SO2119	0.90	-0.5
2,224,851	-		SO2119	0.90	+0.1
2,224,851	-		SO2119	0.90	+0.6
2,224,851	-		SO2119	0.90	+0.7
2,224,851	-		SO2119	0.90	-0.2
2,224,851	-		SO2119	0.90	+1.5
2,224,851	-		SO2119	0.90	+0.2
2,224,851	-		SO2119	0.90	-2.3
2,224,851	-		SO2119	0.90	-1.2
2,224,851	-		SO2119	0.90	+0.7
2,224,851	-		SO2119	0.90	+0.4
2,224,851	-		SO2119	0.90	-0.9
2,224,851	-		SO2119	0.90	+0.4
2,224,851	-		SO2119	0.90	+0.2
2,224,851	-		SO2119	0.90	-0.7
2,224,851	-		SO2119	0.90	+1.2
2,224,851	-		SO2119	0.90	-0.9
2,224,851	-		SO2119	0.90	-0.4
2,224,851	-		SO2119	0.90	-2.6
2,224,851	-		SO2119	0.90	+0.3
2,224,851	-		SO2119	0.90	-1.7
2,224,851	-		SO2119	0.90	-1.2
2,224,851	-		SO2119	0.90	-0.3
2,224,851	-		SO2119	0.90	+1.3
2,224,851	-		SO2119	0.90	-1.3
2,224,851	-		SO2119	0.90	+0.7
2,224,851	-		SO2119	0.90	-0.3
2,224,851	-		SO2119	0.90	+2.2
2,224,851	-		SO2119	0.90	+0.2
2,224,851	-		SO2119	0.90	-0.1
2,224,851	-		SO2119	0.90	-0.6
2,224,851	-		SO2119	0.90	+0.7
2,224,851	-		SO2119	0.90	+0.7
2,224,851	-		SO2119	0.90	+1.1
2,224,851	-		SO2119	0.90	-2.2
2,224,851	-		SO2119	0.90	+0.1
2,224,851	-		SO2119	0.90	-2.3
2,224,851	-		SO2119	0.90	-1.3
2,224,851	-		SO2119	0.90	-0.5
2,224,851	-		SO2119	0.90	+0.7
2,224,851	-		SO2119	0.90	-1.0
2,224,851	-		SO2119	0.90	-0.6
2,224,852	-		SO2119	0.90	-1.5
2,224,853	+		SO2119	0.90	-1.3
2,224,853	+		SO2119	0.90	+1.2
2,224,853	+		SO2119	0.90	-0.8
2,224,861	-				+1.5
2,224,861	-				-0.3
2,224,866	+				-0.3
2,224,866	+				-1.5
2,224,866	+				-3.3
2,224,866	+				+1.2
2,224,866	+				-0.6
2,224,874	-				-0.8
2,224,874	-				+1.2
2,224,874	-				-3.8
2,224,876	+				+0.6
2,224,876	+				-0.3
2,224,876	+				+0.2
2,224,878	+				+0.9
2,224,884	-				-0.5
2,224,884	-				-2.7
2,224,888	+				+0.8
2,224,894	-				-2.4
2,224,896	-				-0.7
2,224,902	-				-1.6
2,224,909	+				+0.7
2,224,909	+				+0.7
2,224,923	+				-0.0
2,224,928	+				+0.7
2,224,928	+				-0.9
2,224,928	+				-1.3
2,224,928	+				+0.1
2,224,928	+				+1.0
2,224,928	+				+0.3
2,224,928	+				+0.6
2,224,928	+				+0.1
2,224,931	-				-0.3
2,224,931	-				-0.2
2,224,936	-				+0.8
2,224,936	-				-1.2
2,224,936	-				-0.9
2,224,936	-				-0.5
2,224,942	+				+0.8
2,224,942	+				+0.7
2,224,942	+				-0.8
2,224,947	+				-0.1
2,224,947	+				-0.3
2,224,947	+				-0.7
2,224,947	+				+1.0
2,224,948	+				+0.3
2,224,948	+				+2.5
2,224,949	+				+2.2
2,224,949	+				+1.7
2,224,949	+				-1.3
2,224,949	+				+0.1
2,224,949	+				+1.7
2,224,949	+				+1.0
2,224,949	+				+1.1
2,224,949	+				+0.1
2,224,950	-				+0.3
2,224,955	-				-0.7
2,224,955	-				+0.9
2,224,955	-				+0.7
2,224,955	-				+0.8
2,224,955	-				-1.6
2,224,957	-				-0.2
2,224,957	-				-1.1
2,224,959	+				-0.7
2,224,959	+				-0.4
2,224,959	+				-0.7
2,224,959	+				+0.9
2,224,959	+				+0.2
2,224,967	+				+0.7
2,224,973	-				+0.5
2,225,004	+				+1.7
2,225,023	+				-2.7
2,225,065	+				-0.0
2,225,068	+				-0.0
2,225,082	+	cheY-1	SO2120	0.14	-1.4
2,225,082	+	cheY-1	SO2120	0.14	-0.5
2,225,083	+	cheY-1	SO2120	0.14	-0.3
2,225,090	-	cheY-1	SO2120	0.16	-2.2
2,225,091	-	cheY-1	SO2120	0.16	-1.6
2,225,091	-	cheY-1	SO2120	0.16	-0.1
2,225,091	-	cheY-1	SO2120	0.16	+0.1
2,225,101	-	cheY-1	SO2120	0.19	-2.2
2,225,102	-	cheY-1	SO2120	0.19	-1.0
2,225,143	+	cheY-1	SO2120	0.30	+0.5
2,225,143	+	cheY-1	SO2120	0.30	+1.4
2,225,151	-	cheY-1	SO2120	0.33	-0.9
2,225,213	+	cheY-1	SO2120	0.49	-2.5
2,225,218	+	cheY-1	SO2120	0.51	+0.6
2,225,221	-	cheY-1	SO2120	0.52	+0.2
2,225,287	-	cheY-1	SO2120	0.70	+0.5
2,225,310	+	cheY-1	SO2120	0.76	-1.9
2,225,310	+	cheY-1	SO2120	0.76	+0.4
2,225,310	+	cheY-1	SO2120	0.76	-1.5
2,225,310	+	cheY-1	SO2120	0.76	-0.0
2,225,313	-	cheY-1	SO2120	0.77	-0.3
2,225,317	+	cheY-1	SO2120	0.78	-0.4
2,225,318	-	cheY-1	SO2120	0.78	-0.8
2,225,318	-	cheY-1	SO2120	0.78	-0.7
2,225,318	-	cheY-1	SO2120	0.78	-1.9
2,225,318	-	cheY-1	SO2120	0.78	-0.4
2,225,318	-	cheY-1	SO2120	0.78	+0.0
2,225,374	+				+0.1
2,225,386	+				-0.9
2,225,394	-				-0.7
2,225,594	+				+0.6
2,225,594	+				-1.0
2,225,594	+				-1.3
2,225,594	+				+0.7
2,225,602	-				-0.2
2,225,602	-				+0.7
2,225,602	-				+0.7
2,225,602	-				-2.1
2,225,602	-				+2.5
2,225,684	+	cheA	SO2121	0.13	+0.1
2,225,723	-	cheA	SO2121	0.15	-0.8
2,225,723	-	cheA	SO2121	0.15	+1.1
2,225,723	-	cheA	SO2121	0.15	+1.7
2,225,797	-	cheA	SO2121	0.18	-0.2
2,225,843	-	cheA	SO2121	0.20	-2.8
2,225,900	+	cheA	SO2121	0.23	+0.2
2,225,936	+	cheA	SO2121	0.25	-0.0
2,225,936	+	cheA	SO2121	0.25	+1.2
2,225,944	-	cheA	SO2121	0.25	-1.4
2,226,055	+	cheA	SO2121	0.30	+0.6
2,226,078	+	cheA	SO2121	0.31	-0.4
2,226,206	-	cheA	SO2121	0.38	+0.9
2,226,234	+	cheA	SO2121	0.39	-0.1
2,226,244	+	cheA	SO2121	0.39	+0.3
2,226,254	-	cheA	SO2121	0.40	+0.4
2,226,277	+	cheA	SO2121	0.41	+2.1
2,226,277	+	cheA	SO2121	0.41	+1.3
2,226,278	-	cheA	SO2121	0.41	-0.2
2,226,285	-	cheA	SO2121	0.41	+0.7
2,226,285	-	cheA	SO2121	0.41	-2.5
2,226,285	-	cheA	SO2121	0.41	-1.8
2,226,365	-	cheA	SO2121	0.45	-0.6