Experiment: LB anaerobic; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0726 and SO0727 are separated by 132 nucleotides SO0727 and SO0728 overlap by 4 nucleotides SO0728 and SO0729 are separated by 207 nucleotides SO0729 and SO0730 are separated by 202 nucleotides
SO0726: SO0726 - ABC transporter, ATP-binding protein (NCBI ptt file), at 741,023 to 742,435
SO0726
SO0727: SO0727 - conserved hypothetical protein (NCBI ptt file), at 742,568 to 742,864
SO0727
SO0728: SO0728 - conserved hypothetical protein (NCBI ptt file), at 742,861 to 743,364
SO0728
SO0729: SO0729 - hypothetical protein (NCBI ptt file), at 743,572 to 743,751
SO0729
SO0730: SO0730 - hypothetical protein (NCBI ptt file), at 743,954 to 746,044
SO0730
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 741.893 kb on + strand, within SO0726 at 741.958 kb on - strand, within SO0726 at 742.032 kb on + strand, within SO0726 at 742.045 kb on - strand, within SO0726 at 742.278 kb on + strand, within SO0726 at 742.291 kb on - strand, within SO0726 at 742.312 kb on + strand at 742.313 kb on - strand at 742.319 kb on + strand at 742.367 kb on + strand at 742.398 kb on + strand at 742.406 kb on - strand at 742.406 kb on - strand at 742.412 kb on + strand at 742.420 kb on - strand at 742.444 kb on + strand at 742.452 kb on - strand at 742.452 kb on - strand at 742.452 kb on - strand at 742.535 kb on + strand at 742.689 kb on + strand, within SO0727 at 742.689 kb on - strand, within SO0727 at 742.697 kb on - strand, within SO0727 at 742.721 kb on - strand, within SO0727 at 742.731 kb on - strand, within SO0727 at 742.963 kb on + strand, within SO0728 at 743.016 kb on + strand, within SO0728 at 743.039 kb on + strand, within SO0728 at 743.042 kb on - strand, within SO0728 at 743.055 kb on + strand, within SO0728 at 743.055 kb on + strand, within SO0728 at 743.057 kb on + strand, within SO0728 at 743.098 kb on - strand, within SO0728 at 743.151 kb on + strand, within SO0728 at 743.151 kb on + strand, within SO0728 at 743.159 kb on - strand, within SO0728 at 743.161 kb on - strand, within SO0728 at 743.183 kb on + strand, within SO0728 at 743.220 kb on + strand, within SO0728 at 743.228 kb on + strand, within SO0728 at 743.231 kb on - strand, within SO0728 at 743.265 kb on + strand, within SO0728 at 743.265 kb on + strand, within SO0728 at 743.265 kb on + strand, within SO0728 at 743.265 kb on + strand, within SO0728 at 743.265 kb on + strand, within SO0728 at 743.265 kb on + strand, within SO0728 at 743.270 kb on + strand, within SO0728 at 743.273 kb on - strand, within SO0728 at 743.273 kb on - strand, within SO0728 at 743.273 kb on - strand, within SO0728 at 743.273 kb on - strand, within SO0728 at 743.283 kb on - strand, within SO0728 at 743.283 kb on - strand, within SO0728 at 743.283 kb on - strand, within SO0728 at 743.283 kb on - strand, within SO0728 at 743.297 kb on + strand, within SO0728 at 743.304 kb on - strand, within SO0728 at 743.305 kb on - strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.311 kb on + strand, within SO0728 at 743.312 kb on + strand, within SO0728 at 743.317 kb on + strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.319 kb on - strand at 743.320 kb on - strand at 743.329 kb on + strand at 743.335 kb on + strand at 743.335 kb on + strand at 743.336 kb on - strand at 743.370 kb on + strand at 743.382 kb on - strand at 743.427 kb on - strand at 743.429 kb on - strand at 743.475 kb on + strand at 743.475 kb on + strand at 743.475 kb on + strand at 743.480 kb on + strand at 743.480 kb on + strand at 743.483 kb on - strand at 743.483 kb on - strand at 743.488 kb on - strand at 743.488 kb on - strand at 743.495 kb on + strand at 743.495 kb on + strand at 743.495 kb on + strand at 743.495 kb on + strand at 743.503 kb on - strand at 743.503 kb on - strand at 743.503 kb on - strand at 743.507 kb on + strand at 743.515 kb on - strand at 743.516 kb on + strand at 743.525 kb on - strand at 743.535 kb on - strand at 743.542 kb on + strand at 743.607 kb on + strand, within SO0729 at 743.634 kb on - strand, within SO0729 at 743.639 kb on + strand, within SO0729 at 743.639 kb on + strand, within SO0729 at 743.655 kb on + strand, within SO0729 at 743.656 kb on - strand, within SO0729 at 743.660 kb on + strand, within SO0729 at 743.660 kb on - strand, within SO0729 at 743.663 kb on - strand, within SO0729 at 743.663 kb on - strand, within SO0729 at 743.668 kb on - strand, within SO0729 at 743.668 kb on - strand, within SO0729 at 743.711 kb on + strand, within SO0729 at 743.718 kb on + strand, within SO0729 at 743.726 kb on - strand, within SO0729 at 743.728 kb on - strand, within SO0729 at 743.745 kb on + strand at 743.793 kb on + strand at 743.793 kb on + strand at 743.793 kb on + strand at 743.798 kb on + strand at 743.798 kb on + strand at 743.798 kb on + strand at 743.798 kb on + strand at 743.798 kb on + strand at 743.799 kb on + strand at 743.799 kb on + strand at 743.799 kb on + strand at 743.799 kb on + strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.807 kb on - strand at 743.807 kb on - strand at 743.809 kb on + strand at 743.809 kb on + strand at 743.809 kb on + strand at 743.809 kb on + strand at 743.809 kb on + strand at 743.809 kb on + strand at 743.809 kb on + strand at 743.809 kb on + strand at 743.809 kb on + strand at 743.812 kb on - strand at 743.817 kb on - strand at 743.819 kb on + strand at 743.819 kb on + strand at 743.826 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.827 kb on + strand at 743.834 kb on + strand at 743.834 kb on + strand at 743.834 kb on + strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.835 kb on - strand at 743.847 kb on + strand at 743.853 kb on + strand at 743.853 kb on + strand at 743.853 kb on + strand at 743.853 kb on + strand at 743.855 kb on - strand at 743.855 kb on - strand at 743.855 kb on - strand at 743.856 kb on - strand at 743.856 kb on - strand at 743.856 kb on - strand at 743.856 kb on - strand at 743.856 kb on - strand at 743.856 kb on - strand at 743.858 kb on + strand at 743.861 kb on - strand at 743.861 kb on - strand at 743.861 kb on - strand at 743.871 kb on + strand at 743.872 kb on + strand at 743.877 kb on - strand at 743.884 kb on + strand at 743.884 kb on + strand at 743.892 kb on - strand at 743.892 kb on - strand at 743.893 kb on + strand at 743.894 kb on + strand at 743.894 kb on + strand at 743.895 kb on + strand at 743.895 kb on + strand at 743.895 kb on + strand at 743.895 kb on + strand at 743.895 kb on + strand at 743.895 kb on + strand at 743.895 kb on + strand at 743.901 kb on - strand at 743.902 kb on - strand at 743.902 kb on - strand at 743.902 kb on - strand at 743.902 kb on - strand at 743.903 kb on + strand at 743.903 kb on + strand at 743.903 kb on + strand at 743.903 kb on - strand at 743.903 kb on - strand at 743.903 kb on - strand at 743.903 kb on - strand at 743.903 kb on - strand at 743.903 kb on - strand at 743.903 kb on - strand at 743.909 kb on - strand at 743.909 kb on - strand at 743.911 kb on - strand at 743.911 kb on - strand at 743.911 kb on - strand at 743.911 kb on - strand at 743.925 kb on - strand at 743.930 kb on + strand at 743.930 kb on + strand at 743.930 kb on + strand at 743.930 kb on + strand at 743.930 kb on + strand at 743.930 kb on + strand at 743.930 kb on + strand at 743.930 kb on + strand at 743.930 kb on + strand at 743.933 kb on + strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.938 kb on - strand at 743.943 kb on + strand at 743.943 kb on + strand at 743.951 kb on - strand at 743.951 kb on - strand at 743.951 kb on - strand at 743.951 kb on - strand at 743.951 kb on - strand at 743.980 kb on - strand at 744.011 kb on + strand at 744.018 kb on - strand at 744.019 kb on - strand at 744.019 kb on - strand at 744.028 kb on - strand at 744.033 kb on + strand at 744.033 kb on + strand at 744.041 kb on - strand at 744.041 kb on - strand at 744.046 kb on + strand at 744.054 kb on - strand at 744.056 kb on + strand at 744.090 kb on + strand at 744.103 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.125 kb on + strand at 744.132 kb on + strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.133 kb on - strand at 744.138 kb on + strand at 744.138 kb on + strand at 744.146 kb on + strand at 744.154 kb on - strand at 744.154 kb on - strand at 744.156 kb on + strand at 744.158 kb on - strand at 744.158 kb on - strand at 744.164 kb on - strand, within SO0730 at 744.190 kb on - strand, within SO0730 at 744.241 kb on + strand, within SO0730 at 744.245 kb on - strand, within SO0730 at 744.249 kb on - strand, within SO0730 at 744.249 kb on - strand, within SO0730 at 744.258 kb on + strand, within SO0730 at 744.259 kb on - strand, within SO0730 at 744.262 kb on + strand, within SO0730 at 744.266 kb on - strand, within SO0730 at 744.270 kb on + strand, within SO0730 at 744.282 kb on + strand, within SO0730 at 744.287 kb on + strand, within SO0730 at 744.287 kb on + strand, within SO0730 at 744.297 kb on + strand, within SO0730 at 744.297 kb on + strand, within SO0730 at 744.297 kb on + strand, within SO0730 at 744.305 kb on - strand, within SO0730 at 744.306 kb on + strand, within SO0730 at 744.308 kb on + strand, within SO0730 at 744.308 kb on + strand, within SO0730 at 744.308 kb on + strand, within SO0730 at 744.308 kb on + strand, within SO0730 at 744.308 kb on + strand, within SO0730 at 744.314 kb on - strand, within SO0730 at 744.314 kb on - strand, within SO0730 at 744.314 kb on - strand, within SO0730 at 744.316 kb on + strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.316 kb on - strand, within SO0730 at 744.321 kb on - strand, within SO0730 at 744.340 kb on + strand, within SO0730
Per-strain Table
Position Strand Gene LocusTag Fraction LB anaerobic; ground control remove 741,893 + SO0726 0.62 -2.6 741,958 - SO0726 0.66 +0.9 742,032 + SO0726 0.71 +0.5 742,045 - SO0726 0.72 +0.7 742,278 + SO0726 0.89 -1.6 742,291 - SO0726 0.90 -1.4 742,312 + -0.5 742,313 - -0.5 742,319 + -0.1 742,367 + +0.4 742,398 + +1.3 742,406 - -0.0 742,406 - -0.2 742,412 + -0.1 742,420 - -1.0 742,444 + -0.9 742,452 - +0.6 742,452 - +0.7 742,452 - +0.6 742,535 + -0.8 742,689 + SO0727 0.41 -1.0 742,689 - SO0727 0.41 -0.7 742,697 - SO0727 0.43 +1.0 742,721 - SO0727 0.52 -0.5 742,731 - SO0727 0.55 -0.0 742,963 + SO0728 0.20 +1.5 743,016 + SO0728 0.31 +1.4 743,039 + SO0728 0.35 +0.4 743,042 - SO0728 0.36 -0.7 743,055 + SO0728 0.38 +0.7 743,055 + SO0728 0.38 -1.1 743,057 + SO0728 0.39 +1.3 743,098 - SO0728 0.47 -2.1 743,151 + SO0728 0.58 +1.6 743,151 + SO0728 0.58 +0.8 743,159 - SO0728 0.59 +1.9 743,161 - SO0728 0.60 +0.7 743,183 + SO0728 0.64 -0.1 743,220 + SO0728 0.71 -0.3 743,228 + SO0728 0.73 -0.7 743,231 - SO0728 0.73 +0.7 743,265 + SO0728 0.80 +0.4 743,265 + SO0728 0.80 -1.3 743,265 + SO0728 0.80 +0.0 743,265 + SO0728 0.80 +1.1 743,265 + SO0728 0.80 -0.2 743,265 + SO0728 0.80 -0.1 743,270 + SO0728 0.81 -1.7 743,273 - SO0728 0.82 -0.1 743,273 - SO0728 0.82 -1.0 743,273 - SO0728 0.82 +0.3 743,273 - SO0728 0.82 +0.9 743,283 - SO0728 0.84 +0.8 743,283 - SO0728 0.84 +1.4 743,283 - SO0728 0.84 -1.2 743,283 - SO0728 0.84 +0.6 743,297 + SO0728 0.87 -0.7 743,304 - SO0728 0.88 -1.2 743,305 - SO0728 0.88 +1.3 743,311 + SO0728 0.89 +2.1 743,311 + SO0728 0.89 +1.8 743,311 + SO0728 0.89 -1.3 743,311 + SO0728 0.89 -2.1 743,311 + SO0728 0.89 -0.1 743,311 + SO0728 0.89 +1.0 743,311 + SO0728 0.89 +0.5 743,311 + SO0728 0.89 +0.4 743,311 + SO0728 0.89 +0.1 743,311 + SO0728 0.89 -0.4 743,311 + SO0728 0.89 -1.1 743,311 + SO0728 0.89 -1.3 743,311 + SO0728 0.89 +1.6 743,311 + SO0728 0.89 -0.5 743,311 + SO0728 0.89 +0.3 743,311 + SO0728 0.89 +0.2 743,312 + SO0728 0.89 +0.2 743,317 + -0.4 743,319 - -1.2 743,319 - +0.4 743,319 - +2.5 743,319 - -0.2 743,319 - -0.5 743,319 - -1.0 743,319 - +0.2 743,319 - -1.0 743,319 - -0.1 743,319 - +0.5 743,319 - -0.6 743,319 - -0.1 743,319 - -0.9 743,319 - -2.1 743,319 - +0.8 743,320 - -0.7 743,329 + -0.6 743,335 + -0.7 743,335 + -0.7 743,336 - -0.7 743,370 + -3.2 743,382 - +0.3 743,427 - -1.5 743,429 - +0.3 743,475 + -1.9 743,475 + +0.1 743,475 + -0.3 743,480 + -2.3 743,480 + +0.4 743,483 - -0.3 743,483 - -1.2 743,488 - -0.5 743,488 - -3.4 743,495 + +2.3 743,495 + +0.8 743,495 + +0.9 743,495 + -1.7 743,503 - -1.1 743,503 - -0.1 743,503 - +0.7 743,507 + +0.7 743,515 - -0.7 743,516 + +0.2 743,525 - +0.9 743,535 - +0.5 743,542 + -0.7 743,607 + SO0729 0.19 +1.9 743,634 - SO0729 0.34 -0.2 743,639 + SO0729 0.37 +1.0 743,639 + SO0729 0.37 +0.0 743,655 + SO0729 0.46 +0.4 743,656 - SO0729 0.47 +0.0 743,660 + SO0729 0.49 +1.3 743,660 - SO0729 0.49 +0.2 743,663 - SO0729 0.51 +0.2 743,663 - SO0729 0.51 +0.7 743,668 - SO0729 0.53 +0.3 743,668 - SO0729 0.53 -2.0 743,711 + SO0729 0.77 -1.2 743,718 + SO0729 0.81 +0.3 743,726 - SO0729 0.86 +0.8 743,728 - SO0729 0.87 -0.1 743,745 + +1.3 743,793 + +0.1 743,793 + +0.3 743,793 + +0.7 743,798 + -0.5 743,798 + +0.1 743,798 + +0.5 743,798 + -0.2 743,798 + -0.3 743,799 + +0.1 743,799 + +1.5 743,799 + +0.5 743,799 + -3.1 743,801 - -2.1 743,801 - +0.2 743,801 - -1.5 743,801 - -0.3 743,801 - -0.9 743,801 - -0.5 743,801 - +0.5 743,801 - -1.9 743,801 - -0.1 743,807 - -2.3 743,807 - +0.7 743,809 + +0.1 743,809 + -0.1 743,809 + -2.1 743,809 + -0.7 743,809 + +0.8 743,809 + -0.5 743,809 + -0.5 743,809 + +1.0 743,809 + -0.3 743,812 - -0.8 743,817 - +2.2 743,819 + +1.7 743,819 + +0.6 743,826 + +1.2 743,827 + -0.6 743,827 + -2.1 743,827 + +0.7 743,827 + +0.7 743,827 + +1.0 743,827 + -0.0 743,827 + -0.5 743,827 + -0.7 743,827 + -0.9 743,827 + +0.8 743,827 + +1.0 743,827 + +0.1 743,827 + +0.1 743,834 + +0.6 743,834 + +0.5 743,834 + -1.0 743,835 - -2.1 743,835 - -1.3 743,835 - +0.1 743,835 - +1.1 743,835 - -0.3 743,835 - +0.3 743,835 - +0.7 743,835 - -1.3 743,835 - -2.3 743,835 - -0.6 743,835 - +0.3 743,835 - +0.9 743,835 - +0.1 743,835 - +0.5 743,847 + +0.7 743,853 + -1.3 743,853 + +0.6 743,853 + +0.1 743,853 + +0.3 743,855 - -0.9 743,855 - +1.3 743,855 - -1.2 743,856 - -0.1 743,856 - -1.6 743,856 - -0.7 743,856 - -0.6 743,856 - +0.5 743,856 - -0.0 743,858 + +3.1 743,861 - -0.3 743,861 - +0.4 743,861 - +1.0 743,871 + -0.1 743,872 + +1.8 743,877 - +1.4 743,884 + -2.4 743,884 + +1.2 743,892 - -0.6 743,892 - -0.4 743,893 + +0.8 743,894 + +1.8 743,894 + -0.5 743,895 + +0.4 743,895 + +0.3 743,895 + -0.8 743,895 + +0.3 743,895 + -0.5 743,895 + -1.6 743,895 + -0.7 743,901 - -0.3 743,902 - -1.2 743,902 - -1.3 743,902 - -0.1 743,902 - +0.9 743,903 + -3.3 743,903 + +0.7 743,903 + +1.3 743,903 - +0.7 743,903 - -0.6 743,903 - -1.6 743,903 - +1.1 743,903 - +0.3 743,903 - +0.2 743,903 - -1.1 743,909 - -0.6 743,909 - -1.4 743,911 - -0.0 743,911 - -1.2 743,911 - +0.1 743,911 - +0.6 743,925 - -1.8 743,930 + +0.3 743,930 + -0.0 743,930 + -0.4 743,930 + +0.4 743,930 + -0.3 743,930 + -0.0 743,930 + -0.6 743,930 + +0.1 743,930 + -0.8 743,933 + -1.3 743,938 - -0.2 743,938 - -0.8 743,938 - -0.1 743,938 - -0.1 743,938 - -1.1 743,938 - +0.7 743,938 - +0.5 743,938 - +0.2 743,938 - +0.6 743,938 - +0.0 743,938 - -1.5 743,938 - +1.3 743,938 - 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SO0730 0.17 -0.4 744,316 - SO0730 0.17 +0.4 744,316 - SO0730 0.17 -0.4 744,316 - SO0730 0.17 -1.1 744,316 - SO0730 0.17 -0.4 744,316 - SO0730 0.17 -1.5 744,316 - SO0730 0.17 -0.1 744,316 - SO0730 0.17 -1.4 744,316 - SO0730 0.17 +0.4 744,316 - SO0730 0.17 +0.5 744,321 - SO0730 0.18 -0.2 744,340 + SO0730 0.18 -1.2
Or see this region's nucleotide sequence