Experiment: LB anaerobic; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sspA and sspB overlap by 1 nucleotides sspB and pabA are separated by 154 nucleotides pabA and SO0614 are separated by 172 nucleotides
SO0611: sspA - stringent starvation protein a (NCBI ptt file), at 636,395 to 637,024
sspA
SO0612: sspB - stringent starvation protein b (NCBI ptt file), at 637,024 to 637,461
sspB
SO0613: pabA - para-aminobenzoate synthase glutamine amidotransferase, component II (NCBI ptt file), at 637,616 to 638,191
pabA
SO0614: SO0614 - dipeptidyl peptidase IV, putative (NCBI ptt file), at 638,364 to 640,844
SO0614
Position (kb) 637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 636.717 kb on - strand, within sspA at 636.727 kb on - strand, within sspA at 636.845 kb on + strand, within sspA at 636.878 kb on + strand, within sspA at 636.878 kb on + strand, within sspA at 636.898 kb on + strand, within sspA at 636.934 kb on - strand, within sspA at 637.064 kb on - strand at 637.587 kb on + strand at 637.587 kb on + strand at 637.587 kb on + strand at 637.587 kb on + strand at 637.587 kb on + strand at 637.595 kb on - strand at 637.659 kb on - strand at 637.737 kb on + strand, within pabA at 637.742 kb on + strand, within pabA at 637.772 kb on - strand, within pabA at 637.857 kb on - strand, within pabA at 638.009 kb on + strand, within pabA at 638.056 kb on + strand, within pabA at 638.088 kb on + strand, within pabA at 638.090 kb on + strand, within pabA at 638.152 kb on - strand at 638.244 kb on + strand at 638.315 kb on - strand at 638.321 kb on + strand at 638.321 kb on + strand at 638.329 kb on - strand at 638.329 kb on - strand at 638.366 kb on - strand at 638.422 kb on - strand at 638.447 kb on + strand at 638.472 kb on + strand at 638.674 kb on + strand, within SO0614 at 638.682 kb on - strand, within SO0614 at 638.737 kb on - strand, within SO0614 at 638.750 kb on + strand, within SO0614 at 638.758 kb on - strand, within SO0614 at 638.800 kb on + strand, within SO0614 at 638.908 kb on + strand, within SO0614
Per-strain Table
Position Strand Gene LocusTag Fraction LB anaerobic; ground control remove 636,717 - sspA SO0611 0.51 +0.1 636,727 - sspA SO0611 0.53 +1.4 636,845 + sspA SO0611 0.71 -2.2 636,878 + sspA SO0611 0.77 +0.4 636,878 + sspA SO0611 0.77 +0.4 636,898 + sspA SO0611 0.80 +1.4 636,934 - sspA SO0611 0.86 -1.8 637,064 - +1.4 637,587 + +0.7 637,587 + +0.9 637,587 + -0.6 637,587 + +1.4 637,587 + +1.0 637,595 - -0.8 637,659 - +0.9 637,737 + pabA SO0613 0.21 +1.6 637,742 + pabA SO0613 0.22 +2.4 637,772 - pabA SO0613 0.27 -1.2 637,857 - pabA SO0613 0.42 +1.1 638,009 + pabA SO0613 0.68 +1.7 638,056 + pabA SO0613 0.76 +0.3 638,088 + pabA SO0613 0.82 +0.2 638,090 + pabA SO0613 0.82 -1.2 638,152 - -0.2 638,244 + +0.8 638,315 - -1.3 638,321 + +0.9 638,321 + +0.9 638,329 - +0.4 638,329 - +0.8 638,366 - +0.2 638,422 - +0.1 638,447 + -1.8 638,472 + +0.6 638,674 + SO0614 0.12 +0.5 638,682 - SO0614 0.13 -3.0 638,737 - SO0614 0.15 -3.0 638,750 + SO0614 0.16 -1.2 638,758 - SO0614 0.16 -0.4 638,800 + SO0614 0.18 -0.5 638,908 + SO0614 0.22 -0.3
Or see this region's nucleotide sequence