Experiment: LB anaerobic; ground control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0472 and SO0472.1 are separated by 96 nucleotides SO0472.1 and SO0474 are separated by 73 nucleotides SO0474 and SO0476 are separated by 245 nucleotides SO0476 and nrfF are separated by 16 nucleotides
SO0472: SO0472 - membrane protein, putative (NCBI ptt file), at 496,714 to 497,835
SO0472
SO0472.1: SO0472.1 - hypothetical mitomycin resistance protein (NCBI ptt file), at 497,932 to 498,126
SO0472.1
SO0474: SO0474 - conserved hypothetical protein (NCBI ptt file), at 498,200 to 498,778
SO0474
SO0476: SO0476 - thioredoxin, putative (NCBI ptt file), at 499,024 to 499,608
SO0476
SO0477: nrfF - cytochrome c-type biogenesis protein NrfF precursor (NCBI ptt file), at 499,625 to 500,074
nrfF
Position (kb) 498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 497.215 kb on - strand, within SO0472 at 497.345 kb on + strand, within SO0472 at 497.353 kb on - strand, within SO0472 at 497.492 kb on + strand, within SO0472 at 497.498 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.567 kb on + strand, within SO0472 at 497.575 kb on - strand, within SO0472 at 497.575 kb on - strand, within SO0472 at 497.575 kb on - strand, within SO0472 at 497.575 kb on - strand, within SO0472 at 497.594 kb on + strand, within SO0472 at 497.600 kb on + strand, within SO0472 at 497.600 kb on + strand, within SO0472 at 497.608 kb on - strand, within SO0472 at 497.608 kb on - strand, within SO0472 at 497.608 kb on - strand, within SO0472 at 497.608 kb on - strand, within SO0472 at 497.608 kb on - strand, within SO0472 at 497.667 kb on + strand, within SO0472 at 497.818 kb on - strand at 497.818 kb on - strand at 497.830 kb on + strand at 497.857 kb on - strand at 497.886 kb on + strand at 497.894 kb on - strand at 497.901 kb on + strand at 497.910 kb on - strand at 497.928 kb on - strand at 497.955 kb on - strand, within SO0472.1 at 497.993 kb on + strand, within SO0472.1 at 497.993 kb on + strand, within SO0472.1 at 498.114 kb on - strand at 498.244 kb on - strand at 498.428 kb on + strand, within SO0474 at 498.464 kb on + strand, within SO0474 at 498.534 kb on + strand, within SO0474 at 498.587 kb on + strand, within SO0474 at 498.631 kb on + strand, within SO0474 at 498.648 kb on + strand, within SO0474 at 498.757 kb on + strand at 498.844 kb on - strand at 498.944 kb on + strand at 498.944 kb on + strand at 498.944 kb on + strand at 498.952 kb on - strand at 499.021 kb on + strand at 499.029 kb on - strand at 499.064 kb on - strand at 499.160 kb on + strand, within SO0476 at 499.395 kb on + strand, within SO0476 at 499.395 kb on + strand, within SO0476 at 499.499 kb on - strand, within SO0476 at 499.501 kb on + strand, within SO0476 at 499.509 kb on - strand, within SO0476 at 499.540 kb on + strand, within SO0476 at 499.540 kb on + strand, within SO0476 at 499.540 kb on + strand, within SO0476 at 499.545 kb on + strand, within SO0476 at 499.550 kb on + strand at 499.558 kb on - strand at 499.563 kb on + strand at 499.571 kb on + strand at 499.579 kb on - strand at 499.585 kb on + strand at 499.618 kb on - strand at 499.618 kb on - strand at 499.676 kb on + strand, within nrfF at 499.684 kb on - strand, within nrfF at 499.688 kb on + strand, within nrfF at 499.688 kb on + strand, within nrfF at 499.688 kb on + strand, within nrfF at 499.696 kb on - strand, within nrfF at 499.696 kb on - strand, within nrfF at 499.696 kb on - strand, within nrfF at 499.696 kb on - strand, within nrfF
Per-strain Table
Position Strand Gene LocusTag Fraction LB anaerobic; ground control remove 497,215 - SO0472 0.45 -1.4 497,345 + SO0472 0.56 -0.3 497,353 - SO0472 0.57 +0.2 497,492 + SO0472 0.69 -0.3 497,498 + SO0472 0.70 +0.6 497,567 + SO0472 0.76 -1.1 497,567 + SO0472 0.76 -0.3 497,567 + SO0472 0.76 -0.8 497,567 + SO0472 0.76 -0.7 497,567 + SO0472 0.76 +0.2 497,567 + SO0472 0.76 -1.3 497,567 + SO0472 0.76 -0.7 497,567 + SO0472 0.76 +1.2 497,575 - SO0472 0.77 +1.3 497,575 - SO0472 0.77 +2.9 497,575 - SO0472 0.77 -1.3 497,575 - SO0472 0.77 -0.1 497,594 + SO0472 0.78 -1.4 497,600 + SO0472 0.79 -0.2 497,600 + SO0472 0.79 +2.4 497,608 - SO0472 0.80 -1.2 497,608 - SO0472 0.80 -0.9 497,608 - SO0472 0.80 +0.5 497,608 - SO0472 0.80 +0.3 497,608 - SO0472 0.80 +0.7 497,667 + SO0472 0.85 +0.1 497,818 - -0.4 497,818 - +0.0 497,830 + +0.7 497,857 - -0.6 497,886 + -0.7 497,894 - -0.9 497,901 + -0.2 497,910 - +0.4 497,928 - +0.2 497,955 - SO0472.1 0.12 +0.2 497,993 + SO0472.1 0.31 +1.4 497,993 + SO0472.1 0.31 +0.0 498,114 - +1.0 498,244 - -0.3 498,428 + SO0474 0.39 -1.4 498,464 + SO0474 0.46 +0.7 498,534 + SO0474 0.58 +1.4 498,587 + SO0474 0.67 +1.3 498,631 + SO0474 0.74 +0.7 498,648 + SO0474 0.77 +1.2 498,757 + -0.2 498,844 - -0.0 498,944 + +1.4 498,944 + -0.2 498,944 + +0.3 498,952 - +0.3 499,021 + +0.3 499,029 - -1.7 499,064 - +1.0 499,160 + SO0476 0.23 +1.7 499,395 + SO0476 0.63 -0.6 499,395 + SO0476 0.63 +0.2 499,499 - SO0476 0.81 -0.3 499,501 + SO0476 0.82 -1.2 499,509 - SO0476 0.83 -0.3 499,540 + SO0476 0.88 +0.5 499,540 + SO0476 0.88 +0.3 499,540 + SO0476 0.88 -0.1 499,545 + SO0476 0.89 +1.6 499,550 + +0.0 499,558 - -0.8 499,563 + -1.7 499,571 + +0.4 499,579 - +1.7 499,585 + +1.2 499,618 - -1.3 499,618 - -0.6 499,676 + nrfF SO0477 0.11 -3.0 499,684 - nrfF SO0477 0.13 +0.0 499,688 + nrfF SO0477 0.14 +0.6 499,688 + nrfF SO0477 0.14 -0.4 499,688 + nrfF SO0477 0.14 -0.8 499,696 - nrfF SO0477 0.16 -0.4 499,696 - nrfF SO0477 0.16 +0.5 499,696 - nrfF SO0477 0.16 -0.3 499,696 - nrfF SO0477 0.16 -1.0
Or see this region's nucleotide sequence