Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27370

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27365 and BWI76_RS27370 are separated by 175 nucleotidesBWI76_RS27370 and BWI76_RS27375 overlap by 23 nucleotidesBWI76_RS27375 and BWI76_RS27380 are separated by 174 nucleotides BWI76_RS27365: BWI76_RS27365 - hypothetical protein, at 5,679,015 to 5,679,680 _RS27365 BWI76_RS27370: BWI76_RS27370 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 5,679,856 to 5,681,067 _RS27370 BWI76_RS27375: BWI76_RS27375 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 5,681,045 to 5,681,503 _RS27375 BWI76_RS27380: BWI76_RS27380 - nucleoid occlusion factor SlmA, at 5,681,678 to 5,682,274 _RS27380 Position (kb) 5679 5680 5681 5682Strain fitness (log2 ratio) -3 -2 -1 0 1at 5679.146 kb on + strand, within BWI76_RS27365at 5679.146 kb on + strand, within BWI76_RS27365at 5679.188 kb on - strand, within BWI76_RS27365at 5679.397 kb on + strand, within BWI76_RS27365at 5679.447 kb on - strand, within BWI76_RS27365at 5679.480 kb on - strand, within BWI76_RS27365at 5679.605 kb on + strand, within BWI76_RS27365at 5679.711 kb on - strandat 5679.755 kb on + strandat 5679.816 kb on - strandat 5681.619 kb on - strandat 5681.767 kb on + strand, within BWI76_RS27380at 5681.770 kb on + strand, within BWI76_RS27380

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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5,679,146 + BWI76_RS27365 0.20 -0.5
5,679,146 + BWI76_RS27365 0.20 +0.9
5,679,188 - BWI76_RS27365 0.26 +0.8
5,679,397 + BWI76_RS27365 0.57 +1.3
5,679,447 - BWI76_RS27365 0.65 -1.4
5,679,480 - BWI76_RS27365 0.70 -3.6
5,679,605 + BWI76_RS27365 0.89 +0.3
5,679,711 - +0.6
5,679,755 + +0.8
5,679,816 - +1.0
5,681,619 - +0.1
5,681,767 + BWI76_RS27380 0.15 +0.3
5,681,770 + BWI76_RS27380 0.15 +0.4

Or see this region's nucleotide sequence