Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26660 and BWI76_RS26665 are separated by 237 nucleotides BWI76_RS26665 and BWI76_RS26670 overlap by 4 nucleotides BWI76_RS26670 and BWI76_RS26675 are separated by 159 nucleotides
BWI76_RS26660: BWI76_RS26660 - transcription elongation factor GreB, at 5,520,095 to 5,520,568
_RS26660
BWI76_RS26665: BWI76_RS26665 - DNA-binding response regulator, at 5,520,806 to 5,521,525
_RS26665
BWI76_RS26670: BWI76_RS26670 - two-component sensor histidine kinase, at 5,521,522 to 5,522,883
_RS26670
BWI76_RS26675: BWI76_RS26675 - phosphoesterase PA-phosphatase-like protein, at 5,523,043 to 5,524,314
_RS26675
Position (kb) 5521
5522
5523 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5520.541 kb on + strand at 5520.541 kb on + strand at 5520.549 kb on - strand at 5520.549 kb on - strand at 5520.581 kb on - strand at 5520.582 kb on - strand at 5520.595 kb on + strand at 5520.603 kb on - strand at 5520.663 kb on + strand at 5520.664 kb on + strand at 5520.719 kb on + strand at 5520.729 kb on - strand at 5520.788 kb on + strand at 5520.795 kb on - strand at 5520.795 kb on - strand at 5520.796 kb on + strand at 5520.797 kb on - strand at 5520.851 kb on - strand at 5520.862 kb on + strand at 5520.896 kb on - strand, within BWI76_RS26665 at 5520.917 kb on + strand, within BWI76_RS26665 at 5520.953 kb on + strand, within BWI76_RS26665 at 5521.121 kb on - strand, within BWI76_RS26665 at 5521.340 kb on + strand, within BWI76_RS26665 at 5521.512 kb on + strand at 5521.520 kb on - strand at 5521.573 kb on - strand at 5521.585 kb on - strand at 5521.595 kb on - strand at 5521.621 kb on - strand at 5521.646 kb on + strand at 5521.654 kb on - strand at 5521.666 kb on + strand, within BWI76_RS26670 at 5521.813 kb on + strand, within BWI76_RS26670 at 5521.821 kb on - strand, within BWI76_RS26670 at 5521.821 kb on - strand, within BWI76_RS26670 at 5521.958 kb on + strand, within BWI76_RS26670 at 5521.966 kb on - strand, within BWI76_RS26670 at 5521.966 kb on - strand, within BWI76_RS26670 at 5522.084 kb on + strand, within BWI76_RS26670 at 5522.150 kb on + strand, within BWI76_RS26670 at 5522.177 kb on + strand, within BWI76_RS26670 at 5522.219 kb on + strand, within BWI76_RS26670 at 5522.269 kb on - strand, within BWI76_RS26670 at 5522.349 kb on + strand, within BWI76_RS26670 at 5522.357 kb on - strand, within BWI76_RS26670 at 5522.400 kb on - strand, within BWI76_RS26670 at 5522.421 kb on + strand, within BWI76_RS26670 at 5522.422 kb on - strand, within BWI76_RS26670 at 5522.439 kb on - strand, within BWI76_RS26670 at 5522.564 kb on - strand, within BWI76_RS26670 at 5522.660 kb on - strand at 5522.660 kb on - strand, within BWI76_RS26670 at 5522.662 kb on + strand, within BWI76_RS26670 at 5522.718 kb on - strand, within BWI76_RS26670 at 5522.774 kb on - strand at 5523.007 kb on + strand at 5523.088 kb on - strand at 5523.105 kb on - strand at 5523.172 kb on - strand, within BWI76_RS26675 at 5523.195 kb on + strand, within BWI76_RS26675 at 5523.195 kb on + strand, within BWI76_RS26675 at 5523.239 kb on - strand, within BWI76_RS26675 at 5523.355 kb on - strand, within BWI76_RS26675 at 5523.408 kb on + strand, within BWI76_RS26675 at 5523.526 kb on + strand, within BWI76_RS26675 at 5523.608 kb on + strand, within BWI76_RS26675 at 5523.647 kb on + strand, within BWI76_RS26675 at 5523.647 kb on + strand, within BWI76_RS26675 at 5523.647 kb on + strand, within BWI76_RS26675 at 5523.652 kb on + strand, within BWI76_RS26675 at 5523.655 kb on - strand, within BWI76_RS26675 at 5523.655 kb on - strand, within BWI76_RS26675 at 5523.698 kb on + strand, within BWI76_RS26675 at 5523.698 kb on + strand, within BWI76_RS26675 at 5523.706 kb on - strand, within BWI76_RS26675 at 5523.762 kb on + strand, within BWI76_RS26675 at 5523.820 kb on + strand, within BWI76_RS26675 at 5523.828 kb on - strand, within BWI76_RS26675
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,520,541 + -0.6 5,520,541 + +0.7 5,520,549 - +0.7 5,520,549 - -2.9 5,520,581 - -1.1 5,520,582 - +1.3 5,520,595 + -0.5 5,520,603 - -0.6 5,520,663 + +0.3 5,520,664 + -1.4 5,520,719 + -0.1 5,520,729 - -2.4 5,520,788 + -0.4 5,520,795 - -0.1 5,520,795 - +0.5 5,520,796 + -2.8 5,520,797 - -1.5 5,520,851 - -3.8 5,520,862 + -2.1 5,520,896 - BWI76_RS26665 0.12 -2.6 5,520,917 + BWI76_RS26665 0.15 -0.6 5,520,953 + BWI76_RS26665 0.20 -2.2 5,521,121 - BWI76_RS26665 0.44 -4.5 5,521,340 + BWI76_RS26665 0.74 -1.9 5,521,512 + -1.1 5,521,520 - -0.9 5,521,573 - -1.1 5,521,585 - -1.4 5,521,595 - -1.4 5,521,621 - -3.0 5,521,646 + -0.6 5,521,654 - -2.8 5,521,666 + BWI76_RS26670 0.11 -4.0 5,521,813 + BWI76_RS26670 0.21 -3.2 5,521,821 - BWI76_RS26670 0.22 -3.8 5,521,821 - BWI76_RS26670 0.22 -1.2 5,521,958 + BWI76_RS26670 0.32 -1.6 5,521,966 - BWI76_RS26670 0.33 -2.1 5,521,966 - BWI76_RS26670 0.33 -3.1 5,522,084 + BWI76_RS26670 0.41 -2.2 5,522,150 + BWI76_RS26670 0.46 -1.6 5,522,177 + BWI76_RS26670 0.48 -1.2 5,522,219 + BWI76_RS26670 0.51 -3.9 5,522,269 - BWI76_RS26670 0.55 -2.1 5,522,349 + BWI76_RS26670 0.61 -1.6 5,522,357 - BWI76_RS26670 0.61 -4.5 5,522,400 - BWI76_RS26670 0.64 -3.4 5,522,421 + BWI76_RS26670 0.66 -4.8 5,522,422 - BWI76_RS26670 0.66 -0.9 5,522,439 - BWI76_RS26670 0.67 -3.9 5,522,564 - BWI76_RS26670 0.77 -4.8 5,522,660 - -1.1 5,522,660 - BWI76_RS26670 0.84 -0.5 5,522,662 + BWI76_RS26670 0.84 -4.8 5,522,718 - BWI76_RS26670 0.88 +0.9 5,522,774 - -2.3 5,523,007 + +0.5 5,523,088 - +1.9 5,523,105 - +0.1 5,523,172 - BWI76_RS26675 0.10 +0.2 5,523,195 + BWI76_RS26675 0.12 +0.9 5,523,195 + BWI76_RS26675 0.12 +0.5 5,523,239 - BWI76_RS26675 0.15 -0.4 5,523,355 - BWI76_RS26675 0.25 +0.8 5,523,408 + BWI76_RS26675 0.29 +1.4 5,523,526 + BWI76_RS26675 0.38 -0.3 5,523,608 + BWI76_RS26675 0.44 +0.5 5,523,647 + BWI76_RS26675 0.47 -1.3 5,523,647 + BWI76_RS26675 0.47 +0.3 5,523,647 + BWI76_RS26675 0.47 -0.4 5,523,652 + BWI76_RS26675 0.48 -0.6 5,523,655 - BWI76_RS26675 0.48 -0.1 5,523,655 - BWI76_RS26675 0.48 -0.1 5,523,698 + BWI76_RS26675 0.51 +0.3 5,523,698 + BWI76_RS26675 0.51 +2.4 5,523,706 - BWI76_RS26675 0.52 -0.6 5,523,762 + BWI76_RS26675 0.57 +0.8 5,523,820 + BWI76_RS26675 0.61 +0.9 5,523,828 - BWI76_RS26675 0.62 -0.0
Or see this region's nucleotide sequence