Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26315 and BWI76_RS26320 are separated by 18 nucleotides BWI76_RS26320 and BWI76_RS26325 are separated by 33 nucleotides
BWI76_RS26315: BWI76_RS26315 - dihydrodipicolinate synthase family protein, at 5,446,712 to 5,447,611
_RS26315
BWI76_RS26320: BWI76_RS26320 - MFS transporter, at 5,447,630 to 5,448,940
_RS26320
BWI76_RS26325: BWI76_RS26325 - altronate hydrolase, at 5,448,974 to 5,450,569
_RS26325
Position (kb) 5447
5448
5449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5446.754 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.759 kb on + strand at 5446.765 kb on + strand at 5446.765 kb on + strand at 5446.767 kb on - strand at 5446.767 kb on - strand at 5446.782 kb on + strand at 5446.790 kb on - strand at 5446.837 kb on - strand, within BWI76_RS26315 at 5446.837 kb on - strand, within BWI76_RS26315 at 5446.842 kb on - strand, within BWI76_RS26315 at 5446.842 kb on - strand, within BWI76_RS26315 at 5446.847 kb on - strand, within BWI76_RS26315 at 5446.917 kb on + strand, within BWI76_RS26315 at 5446.927 kb on - strand, within BWI76_RS26315 at 5446.962 kb on + strand, within BWI76_RS26315 at 5446.969 kb on + strand, within BWI76_RS26315 at 5446.980 kb on - strand, within BWI76_RS26315 at 5446.982 kb on + strand, within BWI76_RS26315 at 5446.988 kb on - strand, within BWI76_RS26315 at 5446.988 kb on - strand, within BWI76_RS26315 at 5446.989 kb on + strand, within BWI76_RS26315 at 5446.993 kb on - strand, within BWI76_RS26315 at 5446.993 kb on - strand, within BWI76_RS26315 at 5447.050 kb on - strand at 5447.058 kb on - strand, within BWI76_RS26315 at 5447.130 kb on + strand, within BWI76_RS26315 at 5447.134 kb on + strand, within BWI76_RS26315 at 5447.151 kb on + strand, within BWI76_RS26315 at 5447.151 kb on + strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.159 kb on - strand, within BWI76_RS26315 at 5447.161 kb on + strand, within BWI76_RS26315 at 5447.186 kb on - strand, within BWI76_RS26315 at 5447.195 kb on - strand, within BWI76_RS26315 at 5447.205 kb on - strand, within BWI76_RS26315 at 5447.239 kb on + strand, within BWI76_RS26315 at 5447.244 kb on + strand, within BWI76_RS26315 at 5447.247 kb on - strand, within BWI76_RS26315 at 5447.284 kb on + strand, within BWI76_RS26315 at 5447.292 kb on - strand at 5447.316 kb on - strand, within BWI76_RS26315 at 5447.321 kb on - strand, within BWI76_RS26315 at 5447.354 kb on + strand, within BWI76_RS26315 at 5447.354 kb on + strand, within BWI76_RS26315 at 5447.362 kb on - strand, within BWI76_RS26315 at 5447.370 kb on + strand, within BWI76_RS26315 at 5447.487 kb on + strand, within BWI76_RS26315 at 5447.502 kb on + strand, within BWI76_RS26315 at 5447.502 kb on + strand, within BWI76_RS26315 at 5447.502 kb on + strand, within BWI76_RS26315 at 5447.511 kb on + strand, within BWI76_RS26315 at 5447.531 kb on + strand at 5447.532 kb on + strand at 5447.547 kb on + strand at 5447.547 kb on + strand at 5447.551 kb on - strand at 5447.551 kb on - strand at 5447.551 kb on - strand at 5447.555 kb on - strand at 5447.555 kb on - strand at 5447.555 kb on - strand at 5447.562 kb on + strand at 5447.612 kb on + strand at 5447.617 kb on + strand at 5447.637 kb on + strand at 5447.638 kb on - strand at 5447.645 kb on + strand at 5447.646 kb on - strand at 5447.653 kb on - strand at 5447.653 kb on - strand at 5447.662 kb on + strand at 5447.702 kb on - strand at 5447.732 kb on + strand at 5447.757 kb on - strand at 5447.757 kb on - strand at 5447.776 kb on + strand, within BWI76_RS26320 at 5447.781 kb on + strand, within BWI76_RS26320 at 5447.784 kb on - strand, within BWI76_RS26320 at 5447.784 kb on - strand, within BWI76_RS26320 at 5447.789 kb on - strand, within BWI76_RS26320 at 5447.789 kb on - strand, within BWI76_RS26320 at 5447.796 kb on + strand, within BWI76_RS26320 at 5447.799 kb on - strand, within BWI76_RS26320 at 5447.835 kb on + strand, within BWI76_RS26320 at 5447.843 kb on - strand, within BWI76_RS26320 at 5447.845 kb on + strand, within BWI76_RS26320 at 5447.870 kb on - strand, within BWI76_RS26320 at 5447.914 kb on + strand, within BWI76_RS26320 at 5447.914 kb on + strand, within BWI76_RS26320 at 5447.922 kb on - strand, within BWI76_RS26320 at 5447.928 kb on + strand, within BWI76_RS26320 at 5447.936 kb on - strand, within BWI76_RS26320 at 5447.941 kb on - strand, within BWI76_RS26320 at 5447.941 kb on - strand, within BWI76_RS26320 at 5448.098 kb on - strand, within BWI76_RS26320 at 5448.098 kb on - strand, within BWI76_RS26320 at 5448.337 kb on + strand, within BWI76_RS26320 at 5448.345 kb on - strand, within BWI76_RS26320 at 5448.382 kb on + strand, within BWI76_RS26320 at 5448.395 kb on + strand, within BWI76_RS26320 at 5448.395 kb on + strand, within BWI76_RS26320 at 5448.468 kb on + strand, within BWI76_RS26320 at 5448.702 kb on - strand, within BWI76_RS26320 at 5448.726 kb on + strand, within BWI76_RS26320 at 5448.817 kb on - strand at 5448.941 kb on + strand at 5448.949 kb on - strand at 5448.949 kb on - strand at 5449.272 kb on + strand, within BWI76_RS26325 at 5449.295 kb on - strand, within BWI76_RS26325 at 5449.426 kb on + strand, within BWI76_RS26325 at 5449.507 kb on - strand, within BWI76_RS26325 at 5449.573 kb on - strand, within BWI76_RS26325 at 5449.573 kb on - strand, within BWI76_RS26325 at 5449.575 kb on + strand, within BWI76_RS26325 at 5449.583 kb on - strand, within BWI76_RS26325 at 5449.788 kb on + strand, within BWI76_RS26325 at 5449.881 kb on + strand, within BWI76_RS26325
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,446,754 + +1.0 5,446,759 + -1.0 5,446,759 + +0.2 5,446,759 + -1.5 5,446,759 + +1.3 5,446,759 + -0.1 5,446,759 + -2.6 5,446,759 + -1.6 5,446,765 + +1.7 5,446,765 + -1.4 5,446,767 - -1.0 5,446,767 - +1.0 5,446,782 + -1.4 5,446,790 - +1.5 5,446,837 - BWI76_RS26315 0.14 +1.0 5,446,837 - BWI76_RS26315 0.14 +0.1 5,446,842 - BWI76_RS26315 0.14 -0.0 5,446,842 - BWI76_RS26315 0.14 +1.2 5,446,847 - BWI76_RS26315 0.15 +0.6 5,446,917 + BWI76_RS26315 0.23 -0.0 5,446,927 - BWI76_RS26315 0.24 +1.0 5,446,962 + BWI76_RS26315 0.28 -2.0 5,446,969 + BWI76_RS26315 0.29 -1.0 5,446,980 - BWI76_RS26315 0.30 -1.0 5,446,982 + BWI76_RS26315 0.30 -2.0 5,446,988 - BWI76_RS26315 0.31 +0.4 5,446,988 - BWI76_RS26315 0.31 -0.5 5,446,989 + BWI76_RS26315 0.31 -0.0 5,446,993 - BWI76_RS26315 0.31 -0.8 5,446,993 - BWI76_RS26315 0.31 -1.0 5,447,050 - +1.0 5,447,058 - BWI76_RS26315 0.38 -1.8 5,447,130 + BWI76_RS26315 0.46 +1.1 5,447,134 + BWI76_RS26315 0.47 -0.7 5,447,151 + BWI76_RS26315 0.49 +1.6 5,447,151 + BWI76_RS26315 0.49 -0.0 5,447,159 - BWI76_RS26315 0.50 +0.6 5,447,159 - BWI76_RS26315 0.50 +2.9 5,447,159 - BWI76_RS26315 0.50 -0.6 5,447,159 - BWI76_RS26315 0.50 +0.1 5,447,159 - BWI76_RS26315 0.50 -1.2 5,447,159 - BWI76_RS26315 0.50 -0.3 5,447,159 - BWI76_RS26315 0.50 +0.2 5,447,161 + BWI76_RS26315 0.50 -1.4 5,447,186 - BWI76_RS26315 0.53 +0.6 5,447,195 - BWI76_RS26315 0.54 +0.6 5,447,205 - BWI76_RS26315 0.55 -2.2 5,447,239 + BWI76_RS26315 0.59 -1.4 5,447,244 + BWI76_RS26315 0.59 +0.6 5,447,247 - BWI76_RS26315 0.59 +0.1 5,447,284 + BWI76_RS26315 0.64 +1.0 5,447,292 - +1.0 5,447,316 - BWI76_RS26315 0.67 -1.2 5,447,321 - BWI76_RS26315 0.68 -0.9 5,447,354 + BWI76_RS26315 0.71 +1.3 5,447,354 + BWI76_RS26315 0.71 +0.3 5,447,362 - BWI76_RS26315 0.72 +0.3 5,447,370 + BWI76_RS26315 0.73 -0.6 5,447,487 + BWI76_RS26315 0.86 -0.8 5,447,502 + BWI76_RS26315 0.88 -0.0 5,447,502 + BWI76_RS26315 0.88 +0.7 5,447,502 + BWI76_RS26315 0.88 -0.9 5,447,511 + BWI76_RS26315 0.89 -0.6 5,447,531 + -2.4 5,447,532 + -1.4 5,447,547 + +0.6 5,447,547 + +0.3 5,447,551 - +0.7 5,447,551 - -0.4 5,447,551 - -1.5 5,447,555 - -1.0 5,447,555 - -2.4 5,447,555 - +0.8 5,447,562 + +0.2 5,447,612 + -0.3 5,447,617 + +0.1 5,447,637 + -1.4 5,447,638 - +0.4 5,447,645 + -2.6 5,447,646 - +0.4 5,447,653 - +0.2 5,447,653 - -1.0 5,447,662 + +0.1 5,447,702 - -2.6 5,447,732 + +1.0 5,447,757 - -0.7 5,447,757 - -2.0 5,447,776 + BWI76_RS26320 0.11 -1.8 5,447,781 + BWI76_RS26320 0.12 -0.7 5,447,784 - BWI76_RS26320 0.12 +1.8 5,447,784 - BWI76_RS26320 0.12 +1.0 5,447,789 - BWI76_RS26320 0.12 -0.3 5,447,789 - BWI76_RS26320 0.12 +0.4 5,447,796 + BWI76_RS26320 0.13 +1.3 5,447,799 - BWI76_RS26320 0.13 -0.4 5,447,835 + BWI76_RS26320 0.16 -1.0 5,447,843 - BWI76_RS26320 0.16 +0.4 5,447,845 + BWI76_RS26320 0.16 +0.2 5,447,870 - BWI76_RS26320 0.18 -0.0 5,447,914 + BWI76_RS26320 0.22 +0.3 5,447,914 + BWI76_RS26320 0.22 -0.0 5,447,922 - BWI76_RS26320 0.22 +0.7 5,447,928 + BWI76_RS26320 0.23 -1.1 5,447,936 - BWI76_RS26320 0.23 -1.0 5,447,941 - BWI76_RS26320 0.24 +0.2 5,447,941 - BWI76_RS26320 0.24 +0.8 5,448,098 - BWI76_RS26320 0.36 -1.0 5,448,098 - BWI76_RS26320 0.36 +0.3 5,448,337 + BWI76_RS26320 0.54 +0.3 5,448,345 - BWI76_RS26320 0.55 +0.6 5,448,382 + BWI76_RS26320 0.57 +2.3 5,448,395 + BWI76_RS26320 0.58 +0.7 5,448,395 + BWI76_RS26320 0.58 -0.8 5,448,468 + BWI76_RS26320 0.64 -0.8 5,448,702 - BWI76_RS26320 0.82 +0.5 5,448,726 + BWI76_RS26320 0.84 +0.5 5,448,817 - +1.1 5,448,941 + +0.2 5,448,949 - -0.3 5,448,949 - -0.4 5,449,272 + BWI76_RS26325 0.19 -2.9 5,449,295 - BWI76_RS26325 0.20 -0.3 5,449,426 + BWI76_RS26325 0.28 +1.6 5,449,507 - BWI76_RS26325 0.33 +1.0 5,449,573 - BWI76_RS26325 0.38 -1.0 5,449,573 - BWI76_RS26325 0.38 -2.2 5,449,575 + BWI76_RS26325 0.38 -1.2 5,449,583 - BWI76_RS26325 0.38 -1.6 5,449,788 + BWI76_RS26325 0.51 +0.1 5,449,881 + BWI76_RS26325 0.57 +0.9
Or see this region's nucleotide sequence