Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26215 and BWI76_RS26220 are separated by 247 nucleotides BWI76_RS26220 and BWI76_RS26225 are separated by 358 nucleotides
BWI76_RS26215: BWI76_RS26215 - glycogen-branching enzyme, at 5,424,237 to 5,426,423
_RS26215
BWI76_RS26220: BWI76_RS26220 - aspartate-semialdehyde dehydrogenase, at 5,426,671 to 5,427,777
_RS26220
BWI76_RS26225: BWI76_RS26225 - DNA processing protein DprA, at 5,428,136 to 5,429,341
_RS26225
Position (kb)
5426
5427
5428 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5425.943 kb on + strand, within BWI76_RS26215 at 5426.125 kb on - strand, within BWI76_RS26215 at 5426.334 kb on + strand at 5426.413 kb on + strand at 5426.489 kb on - strand at 5426.501 kb on - strand at 5426.513 kb on - strand at 5426.535 kb on - strand at 5426.572 kb on + strand at 5427.801 kb on - strand at 5427.826 kb on - strand at 5427.836 kb on - strand at 5428.144 kb on + strand at 5428.152 kb on - strand at 5428.152 kb on - strand at 5428.184 kb on + strand at 5428.200 kb on - strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.214 kb on - strand at 5428.214 kb on - strand at 5428.214 kb on - strand at 5428.214 kb on - strand at 5428.214 kb on - strand at 5428.214 kb on - strand at 5428.228 kb on + strand at 5428.228 kb on + strand at 5428.228 kb on + strand at 5428.228 kb on + strand at 5428.228 kb on + strand at 5428.228 kb on + strand at 5428.236 kb on - strand at 5428.388 kb on + strand, within BWI76_RS26225 at 5428.407 kb on + strand, within BWI76_RS26225 at 5428.530 kb on - strand, within BWI76_RS26225 at 5428.569 kb on - strand, within BWI76_RS26225 at 5428.714 kb on - strand, within BWI76_RS26225
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,425,943 + BWI76_RS26215 0.78 -0.1 5,426,125 - BWI76_RS26215 0.86 +0.8 5,426,334 + +0.8 5,426,413 + -0.0 5,426,489 - -3.3 5,426,501 - -0.5 5,426,513 - +1.0 5,426,535 - -0.0 5,426,572 + -0.3 5,427,801 - +0.3 5,427,826 - +1.0 5,427,836 - -0.6 5,428,144 + +0.2 5,428,152 - -3.3 5,428,152 - +0.8 5,428,184 + +1.0 5,428,200 - +1.9 5,428,206 + +0.9 5,428,206 + +1.6 5,428,206 + +0.1 5,428,206 + -2.2 5,428,206 + +0.2 5,428,206 + +0.2 5,428,206 + +0.7 5,428,206 + -1.8 5,428,214 - -1.2 5,428,214 - +0.5 5,428,214 - +0.8 5,428,214 - -0.6 5,428,214 - +1.0 5,428,214 - -2.5 5,428,228 + +2.9 5,428,228 + +0.4 5,428,228 + +0.8 5,428,228 + -0.0 5,428,228 + -1.6 5,428,228 + -0.4 5,428,236 - -0.9 5,428,388 + BWI76_RS26225 0.21 -2.7 5,428,407 + BWI76_RS26225 0.22 +0.5 5,428,530 - BWI76_RS26225 0.33 +0.4 5,428,569 - BWI76_RS26225 0.36 +0.1 5,428,714 - BWI76_RS26225 0.48 -1.9
Or see this region's nucleotide sequence