Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25585 and BWI76_RS25590 are separated by 282 nucleotides BWI76_RS25590 and BWI76_RS25595 are separated by 226 nucleotides BWI76_RS25595 and BWI76_RS25600 are separated by 39 nucleotides BWI76_RS25600 and BWI76_RS25605 are separated by 14 nucleotides BWI76_RS25605 and BWI76_RS25610 are separated by 56 nucleotides
BWI76_RS25585: BWI76_RS25585 - multidrug efflux RND transporter permease subunit, at 5,316,320 to 5,319,430
_RS25585
BWI76_RS25590: BWI76_RS25590 - membrane protein, at 5,319,713 to 5,319,934
_RS25590
BWI76_RS25595: BWI76_RS25595 - 5S ribosomal RNA, at 5,320,161 to 5,320,276
_RS25595
BWI76_RS25600: BWI76_RS25600 - tRNA-Thr, at 5,320,316 to 5,320,391
_RS25600
BWI76_RS25605: BWI76_RS25605 - 5S ribosomal RNA, at 5,320,406 to 5,320,521
_RS25605
BWI76_RS25610: BWI76_RS25610 - 23S ribosomal RNA, at 5,320,578 to 5,323,505
_RS25610
Position (kb) 5319
5320 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5318.741 kb on + strand, within BWI76_RS25585 at 5318.741 kb on + strand, within BWI76_RS25585 at 5318.747 kb on - strand, within BWI76_RS25585 at 5318.748 kb on - strand, within BWI76_RS25585 at 5318.748 kb on - strand, within BWI76_RS25585 at 5318.767 kb on + strand, within BWI76_RS25585 at 5318.767 kb on + strand, within BWI76_RS25585 at 5318.871 kb on - strand, within BWI76_RS25585 at 5318.879 kb on + strand, within BWI76_RS25585 at 5318.879 kb on + strand, within BWI76_RS25585 at 5318.879 kb on + strand, within BWI76_RS25585 at 5318.889 kb on + strand, within BWI76_RS25585 at 5318.897 kb on - strand, within BWI76_RS25585 at 5318.897 kb on - strand, within BWI76_RS25585 at 5318.897 kb on - strand, within BWI76_RS25585 at 5319.002 kb on + strand, within BWI76_RS25585 at 5319.002 kb on + strand, within BWI76_RS25585 at 5319.005 kb on - strand, within BWI76_RS25585 at 5319.010 kb on - strand, within BWI76_RS25585 at 5319.020 kb on - strand, within BWI76_RS25585 at 5319.030 kb on + strand, within BWI76_RS25585 at 5319.038 kb on - strand, within BWI76_RS25585 at 5319.038 kb on - strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.043 kb on - strand, within BWI76_RS25585 at 5319.045 kb on + strand, within BWI76_RS25585 at 5319.048 kb on - strand, within BWI76_RS25585 at 5319.053 kb on - strand, within BWI76_RS25585 at 5319.057 kb on - strand, within BWI76_RS25585 at 5319.205 kb on + strand at 5319.231 kb on + strand at 5319.231 kb on + strand at 5319.231 kb on + strand at 5319.231 kb on + strand at 5319.236 kb on + strand at 5319.236 kb on + strand at 5319.239 kb on - strand at 5319.239 kb on - strand at 5319.239 kb on - strand at 5319.239 kb on - strand at 5319.255 kb on + strand at 5319.263 kb on - strand at 5319.269 kb on - strand at 5319.274 kb on + strand at 5319.296 kb on + strand at 5319.324 kb on + strand at 5319.332 kb on - strand at 5319.332 kb on - strand at 5319.347 kb on - strand at 5319.366 kb on + strand at 5319.402 kb on - strand at 5319.425 kb on + strand at 5319.433 kb on - strand at 5319.450 kb on + strand at 5319.489 kb on + strand at 5319.495 kb on - strand at 5319.497 kb on - strand at 5319.548 kb on - strand at 5319.629 kb on + strand at 5319.634 kb on - strand at 5319.637 kb on - strand at 5319.639 kb on - strand at 5319.656 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.700 kb on - strand at 5319.742 kb on + strand, within BWI76_RS25590 at 5319.754 kb on + strand, within BWI76_RS25590 at 5319.764 kb on + strand, within BWI76_RS25590 at 5319.764 kb on + strand, within BWI76_RS25590 at 5319.764 kb on + strand, within BWI76_RS25590 at 5319.764 kb on + strand, within BWI76_RS25590 at 5319.772 kb on - strand, within BWI76_RS25590 at 5319.774 kb on + strand, within BWI76_RS25590 at 5319.782 kb on - strand, within BWI76_RS25590 at 5319.812 kb on + strand, within BWI76_RS25590 at 5319.817 kb on + strand, within BWI76_RS25590 at 5319.817 kb on + strand, within BWI76_RS25590 at 5319.826 kb on - strand, within BWI76_RS25590 at 5319.850 kb on - strand, within BWI76_RS25590 at 5320.004 kb on - strand at 5320.019 kb on - strand at 5320.353 kb on - strand, within BWI76_RS25600
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,318,741 + BWI76_RS25585 0.78 -2.3 5,318,741 + BWI76_RS25585 0.78 -0.9 5,318,747 - BWI76_RS25585 0.78 +0.8 5,318,748 - BWI76_RS25585 0.78 +1.3 5,318,748 - BWI76_RS25585 0.78 -3.2 5,318,767 + BWI76_RS25585 0.79 -2.2 5,318,767 + BWI76_RS25585 0.79 +0.8 5,318,871 - BWI76_RS25585 0.82 +1.3 5,318,879 + BWI76_RS25585 0.82 +0.0 5,318,879 + BWI76_RS25585 0.82 +1.0 5,318,879 + BWI76_RS25585 0.82 -0.3 5,318,889 + BWI76_RS25585 0.83 -0.6 5,318,897 - BWI76_RS25585 0.83 +0.8 5,318,897 - BWI76_RS25585 0.83 -2.3 5,318,897 - BWI76_RS25585 0.83 -0.6 5,319,002 + BWI76_RS25585 0.86 +0.0 5,319,002 + BWI76_RS25585 0.86 -0.2 5,319,005 - BWI76_RS25585 0.86 +1.0 5,319,010 - BWI76_RS25585 0.86 +0.5 5,319,020 - BWI76_RS25585 0.87 -1.2 5,319,030 + BWI76_RS25585 0.87 +0.3 5,319,038 - BWI76_RS25585 0.87 +1.7 5,319,038 - BWI76_RS25585 0.87 -1.0 5,319,040 + BWI76_RS25585 0.87 +0.3 5,319,040 + BWI76_RS25585 0.87 -0.6 5,319,040 + BWI76_RS25585 0.87 -2.6 5,319,040 + BWI76_RS25585 0.87 -0.4 5,319,040 + BWI76_RS25585 0.87 +1.0 5,319,040 + BWI76_RS25585 0.87 +0.1 5,319,043 - BWI76_RS25585 0.88 -0.4 5,319,045 + BWI76_RS25585 0.88 -0.4 5,319,048 - BWI76_RS25585 0.88 -1.0 5,319,053 - BWI76_RS25585 0.88 -1.7 5,319,057 - BWI76_RS25585 0.88 -2.7 5,319,205 + +0.6 5,319,231 + -0.7 5,319,231 + +1.9 5,319,231 + -1.6 5,319,231 + -1.4 5,319,236 + +1.2 5,319,236 + +1.7 5,319,239 - -0.6 5,319,239 - +1.6 5,319,239 - +0.0 5,319,239 - +3.6 5,319,255 + -3.2 5,319,263 - -1.6 5,319,269 - +0.3 5,319,274 + +0.6 5,319,296 + -0.1 5,319,324 + +0.7 5,319,332 - +0.2 5,319,332 - +0.0 5,319,347 - +0.9 5,319,366 + +1.0 5,319,402 - -0.2 5,319,425 + +0.6 5,319,433 - -1.0 5,319,450 + -2.8 5,319,489 + +1.3 5,319,495 - -0.2 5,319,497 - +0.6 5,319,548 - -0.4 5,319,629 + -0.7 5,319,634 - -1.0 5,319,637 - +0.0 5,319,639 - -0.5 5,319,656 + -1.9 5,319,664 + -2.9 5,319,664 + -0.6 5,319,664 + +0.7 5,319,664 + -1.0 5,319,664 + +1.1 5,319,664 + +1.0 5,319,664 + -1.4 5,319,664 + +0.1 5,319,672 - -1.2 5,319,672 - +1.1 5,319,672 - +1.1 5,319,672 - -2.6 5,319,672 - -0.9 5,319,672 - -1.8 5,319,672 - -1.6 5,319,672 - -3.5 5,319,672 - -2.2 5,319,672 - -1.0 5,319,672 - +0.0 5,319,675 + +0.6 5,319,675 + +0.2 5,319,675 + -1.1 5,319,675 + -0.5 5,319,675 + -0.2 5,319,675 + -3.2 5,319,675 + -0.4 5,319,675 + +0.1 5,319,683 - -2.5 5,319,683 - +0.0 5,319,683 - -2.3 5,319,683 - +0.8 5,319,683 - +1.2 5,319,683 - +0.3 5,319,683 - -0.7 5,319,700 - -0.8 5,319,742 + BWI76_RS25590 0.13 +0.1 5,319,754 + BWI76_RS25590 0.18 -0.9 5,319,764 + BWI76_RS25590 0.23 -0.2 5,319,764 + BWI76_RS25590 0.23 -1.0 5,319,764 + BWI76_RS25590 0.23 +0.9 5,319,764 + BWI76_RS25590 0.23 +1.9 5,319,772 - BWI76_RS25590 0.27 -0.3 5,319,774 + BWI76_RS25590 0.27 -2.1 5,319,782 - BWI76_RS25590 0.31 +0.6 5,319,812 + BWI76_RS25590 0.45 -1.9 5,319,817 + BWI76_RS25590 0.47 -2.3 5,319,817 + BWI76_RS25590 0.47 +0.5 5,319,826 - BWI76_RS25590 0.51 -4.5 5,319,850 - BWI76_RS25590 0.62 -0.9 5,320,004 - -1.8 5,320,019 - -0.0 5,320,353 - BWI76_RS25600 0.49 +0.3
Or see this region's nucleotide sequence