Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25580 and BWI76_RS25585 are separated by 13 nucleotides BWI76_RS25585 and BWI76_RS25590 are separated by 282 nucleotides BWI76_RS25590 and BWI76_RS25595 are separated by 226 nucleotides BWI76_RS25595 and BWI76_RS25600 are separated by 39 nucleotides BWI76_RS25600 and BWI76_RS25605 are separated by 14 nucleotides
BWI76_RS25580: BWI76_RS25580 - MexX family efflux pump subunit, at 5,315,167 to 5,316,306
_RS25580
BWI76_RS25585: BWI76_RS25585 - multidrug efflux RND transporter permease subunit, at 5,316,320 to 5,319,430
_RS25585
BWI76_RS25590: BWI76_RS25590 - membrane protein, at 5,319,713 to 5,319,934
_RS25590
BWI76_RS25595: BWI76_RS25595 - 5S ribosomal RNA, at 5,320,161 to 5,320,276
_RS25595
BWI76_RS25600: BWI76_RS25600 - tRNA-Thr, at 5,320,316 to 5,320,391
_RS25600
BWI76_RS25605: BWI76_RS25605 - 5S ribosomal RNA, at 5,320,406 to 5,320,521
_RS25605
Position (kb) 5316
5317
5318
5319
5320 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5315.337 kb on + strand, within BWI76_RS25580 at 5315.362 kb on - strand, within BWI76_RS25580 at 5315.389 kb on - strand, within BWI76_RS25580 at 5315.394 kb on + strand at 5315.402 kb on - strand, within BWI76_RS25580 at 5315.423 kb on + strand, within BWI76_RS25580 at 5315.443 kb on - strand, within BWI76_RS25580 at 5315.470 kb on + strand, within BWI76_RS25580 at 5315.478 kb on - strand, within BWI76_RS25580 at 5315.478 kb on - strand, within BWI76_RS25580 at 5315.480 kb on + strand, within BWI76_RS25580 at 5315.584 kb on - strand, within BWI76_RS25580 at 5315.598 kb on + strand, within BWI76_RS25580 at 5315.683 kb on + strand, within BWI76_RS25580 at 5315.735 kb on + strand, within BWI76_RS25580 at 5315.824 kb on + strand, within BWI76_RS25580 at 5315.904 kb on + strand, within BWI76_RS25580 at 5315.904 kb on + strand, within BWI76_RS25580 at 5315.912 kb on - strand at 5315.945 kb on + strand, within BWI76_RS25580 at 5316.116 kb on - strand, within BWI76_RS25580 at 5316.213 kb on - strand at 5316.351 kb on + strand at 5316.355 kb on - strand at 5316.605 kb on - strand at 5316.831 kb on + strand, within BWI76_RS25585 at 5316.831 kb on - strand, within BWI76_RS25585 at 5316.839 kb on - strand, within BWI76_RS25585 at 5316.850 kb on - strand, within BWI76_RS25585 at 5316.943 kb on + strand, within BWI76_RS25585 at 5317.033 kb on - strand, within BWI76_RS25585 at 5317.062 kb on + strand, within BWI76_RS25585 at 5317.119 kb on + strand, within BWI76_RS25585 at 5317.119 kb on + strand, within BWI76_RS25585 at 5317.341 kb on + strand, within BWI76_RS25585 at 5317.412 kb on + strand, within BWI76_RS25585 at 5317.513 kb on + strand, within BWI76_RS25585 at 5317.519 kb on + strand, within BWI76_RS25585 at 5317.596 kb on + strand, within BWI76_RS25585 at 5317.777 kb on + strand, within BWI76_RS25585 at 5317.916 kb on - strand, within BWI76_RS25585 at 5317.923 kb on + strand, within BWI76_RS25585 at 5318.162 kb on - strand, within BWI76_RS25585 at 5318.200 kb on - strand, within BWI76_RS25585 at 5318.224 kb on + strand, within BWI76_RS25585 at 5318.227 kb on - strand, within BWI76_RS25585 at 5318.348 kb on + strand, within BWI76_RS25585 at 5318.363 kb on - strand, within BWI76_RS25585 at 5318.374 kb on + strand, within BWI76_RS25585 at 5318.457 kb on - strand, within BWI76_RS25585 at 5318.494 kb on - strand, within BWI76_RS25585 at 5318.519 kb on + strand, within BWI76_RS25585 at 5318.741 kb on + strand, within BWI76_RS25585 at 5318.741 kb on + strand, within BWI76_RS25585 at 5318.747 kb on - strand, within BWI76_RS25585 at 5318.748 kb on - strand, within BWI76_RS25585 at 5318.748 kb on - strand, within BWI76_RS25585 at 5318.767 kb on + strand, within BWI76_RS25585 at 5318.767 kb on + strand, within BWI76_RS25585 at 5318.871 kb on - strand, within BWI76_RS25585 at 5318.879 kb on + strand, within BWI76_RS25585 at 5318.879 kb on + strand, within BWI76_RS25585 at 5318.879 kb on + strand, within BWI76_RS25585 at 5318.889 kb on + strand, within BWI76_RS25585 at 5318.897 kb on - strand, within BWI76_RS25585 at 5318.897 kb on - strand, within BWI76_RS25585 at 5318.897 kb on - strand, within BWI76_RS25585 at 5319.002 kb on + strand, within BWI76_RS25585 at 5319.002 kb on + strand, within BWI76_RS25585 at 5319.005 kb on - strand, within BWI76_RS25585 at 5319.010 kb on - strand, within BWI76_RS25585 at 5319.020 kb on - strand, within BWI76_RS25585 at 5319.030 kb on + strand, within BWI76_RS25585 at 5319.038 kb on - strand, within BWI76_RS25585 at 5319.038 kb on - strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.040 kb on + strand, within BWI76_RS25585 at 5319.043 kb on - strand, within BWI76_RS25585 at 5319.045 kb on + strand, within BWI76_RS25585 at 5319.048 kb on - strand, within BWI76_RS25585 at 5319.053 kb on - strand, within BWI76_RS25585 at 5319.057 kb on - strand, within BWI76_RS25585 at 5319.205 kb on + strand at 5319.231 kb on + strand at 5319.231 kb on + strand at 5319.231 kb on + strand at 5319.231 kb on + strand at 5319.236 kb on + strand at 5319.236 kb on + strand at 5319.239 kb on - strand at 5319.239 kb on - strand at 5319.239 kb on - strand at 5319.239 kb on - strand at 5319.255 kb on + strand at 5319.263 kb on - strand at 5319.269 kb on - strand at 5319.274 kb on + strand at 5319.296 kb on + strand at 5319.324 kb on + strand at 5319.332 kb on - strand at 5319.332 kb on - strand at 5319.347 kb on - strand at 5319.366 kb on + strand at 5319.402 kb on - strand at 5319.425 kb on + strand at 5319.433 kb on - strand at 5319.450 kb on + strand at 5319.489 kb on + strand at 5319.495 kb on - strand at 5319.497 kb on - strand at 5319.548 kb on - strand at 5319.629 kb on + strand at 5319.634 kb on - strand at 5319.637 kb on - strand at 5319.639 kb on - strand at 5319.656 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.664 kb on + strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.672 kb on - strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.675 kb on + strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.683 kb on - strand at 5319.700 kb on - strand at 5319.742 kb on + strand, within BWI76_RS25590 at 5319.754 kb on + strand, within BWI76_RS25590 at 5319.764 kb on + strand, within BWI76_RS25590 at 5319.764 kb on + strand, within BWI76_RS25590 at 5319.764 kb on + strand, within BWI76_RS25590 at 5319.764 kb on + strand, within BWI76_RS25590 at 5319.772 kb on - strand, within BWI76_RS25590 at 5319.774 kb on + strand, within BWI76_RS25590 at 5319.782 kb on - strand, within BWI76_RS25590 at 5319.812 kb on + strand, within BWI76_RS25590 at 5319.817 kb on + strand, within BWI76_RS25590 at 5319.817 kb on + strand, within BWI76_RS25590 at 5319.826 kb on - strand, within BWI76_RS25590 at 5319.850 kb on - strand, within BWI76_RS25590 at 5319.995 kb on + strand at 5320.004 kb on - strand at 5320.019 kb on - strand at 5320.353 kb on - strand, within BWI76_RS25600
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,315,337 + BWI76_RS25580 0.15 -1.6 5,315,362 - BWI76_RS25580 0.17 +0.5 5,315,389 - BWI76_RS25580 0.19 -1.0 5,315,394 + +0.0 5,315,402 - BWI76_RS25580 0.21 -1.0 5,315,423 + BWI76_RS25580 0.22 -1.7 5,315,443 - BWI76_RS25580 0.24 -0.6 5,315,470 + BWI76_RS25580 0.27 -1.1 5,315,478 - BWI76_RS25580 0.27 -0.7 5,315,478 - BWI76_RS25580 0.27 -0.2 5,315,480 + BWI76_RS25580 0.27 -0.0 5,315,584 - BWI76_RS25580 0.37 -0.6 5,315,598 + BWI76_RS25580 0.38 +0.4 5,315,683 + BWI76_RS25580 0.45 +1.0 5,315,735 + BWI76_RS25580 0.50 -1.8 5,315,824 + BWI76_RS25580 0.58 +0.3 5,315,904 + BWI76_RS25580 0.65 -1.2 5,315,904 + BWI76_RS25580 0.65 +1.1 5,315,912 - -1.2 5,315,945 + BWI76_RS25580 0.68 +0.9 5,316,116 - BWI76_RS25580 0.83 -0.8 5,316,213 - -0.7 5,316,351 + +0.3 5,316,355 - -3.1 5,316,605 - -0.6 5,316,831 + BWI76_RS25585 0.16 +0.0 5,316,831 - BWI76_RS25585 0.16 +1.6 5,316,839 - BWI76_RS25585 0.17 -0.3 5,316,850 - BWI76_RS25585 0.17 +0.5 5,316,943 + BWI76_RS25585 0.20 +0.7 5,317,033 - BWI76_RS25585 0.23 +1.0 5,317,062 + BWI76_RS25585 0.24 -1.0 5,317,119 + BWI76_RS25585 0.26 -0.7 5,317,119 + BWI76_RS25585 0.26 -0.6 5,317,341 + BWI76_RS25585 0.33 +1.7 5,317,412 + BWI76_RS25585 0.35 -0.3 5,317,513 + BWI76_RS25585 0.38 +1.0 5,317,519 + BWI76_RS25585 0.39 +1.7 5,317,596 + BWI76_RS25585 0.41 +0.4 5,317,777 + BWI76_RS25585 0.47 +1.2 5,317,916 - BWI76_RS25585 0.51 +0.4 5,317,923 + BWI76_RS25585 0.52 -1.1 5,318,162 - BWI76_RS25585 0.59 +0.9 5,318,200 - BWI76_RS25585 0.60 -0.7 5,318,224 + BWI76_RS25585 0.61 +0.2 5,318,227 - BWI76_RS25585 0.61 +1.0 5,318,348 + BWI76_RS25585 0.65 +2.6 5,318,363 - BWI76_RS25585 0.66 +0.1 5,318,374 + BWI76_RS25585 0.66 +0.5 5,318,457 - BWI76_RS25585 0.69 -0.3 5,318,494 - BWI76_RS25585 0.70 -2.2 5,318,519 + BWI76_RS25585 0.71 -0.7 5,318,741 + BWI76_RS25585 0.78 -2.3 5,318,741 + BWI76_RS25585 0.78 -0.9 5,318,747 - BWI76_RS25585 0.78 +0.8 5,318,748 - BWI76_RS25585 0.78 +1.3 5,318,748 - BWI76_RS25585 0.78 -3.2 5,318,767 + BWI76_RS25585 0.79 -2.2 5,318,767 + BWI76_RS25585 0.79 +0.8 5,318,871 - BWI76_RS25585 0.82 +1.3 5,318,879 + BWI76_RS25585 0.82 +0.0 5,318,879 + BWI76_RS25585 0.82 +1.0 5,318,879 + BWI76_RS25585 0.82 -0.3 5,318,889 + BWI76_RS25585 0.83 -0.6 5,318,897 - BWI76_RS25585 0.83 +0.8 5,318,897 - BWI76_RS25585 0.83 -2.3 5,318,897 - BWI76_RS25585 0.83 -0.6 5,319,002 + BWI76_RS25585 0.86 +0.0 5,319,002 + BWI76_RS25585 0.86 -0.2 5,319,005 - BWI76_RS25585 0.86 +1.0 5,319,010 - BWI76_RS25585 0.86 +0.5 5,319,020 - BWI76_RS25585 0.87 -1.2 5,319,030 + BWI76_RS25585 0.87 +0.3 5,319,038 - BWI76_RS25585 0.87 +1.7 5,319,038 - BWI76_RS25585 0.87 -1.0 5,319,040 + BWI76_RS25585 0.87 +0.3 5,319,040 + BWI76_RS25585 0.87 -0.6 5,319,040 + BWI76_RS25585 0.87 -2.6 5,319,040 + BWI76_RS25585 0.87 -0.4 5,319,040 + BWI76_RS25585 0.87 +1.0 5,319,040 + BWI76_RS25585 0.87 +0.1 5,319,043 - BWI76_RS25585 0.88 -0.4 5,319,045 + BWI76_RS25585 0.88 -0.4 5,319,048 - BWI76_RS25585 0.88 -1.0 5,319,053 - BWI76_RS25585 0.88 -1.7 5,319,057 - BWI76_RS25585 0.88 -2.7 5,319,205 + +0.6 5,319,231 + -0.7 5,319,231 + +1.9 5,319,231 + -1.6 5,319,231 + -1.4 5,319,236 + +1.2 5,319,236 + +1.7 5,319,239 - -0.6 5,319,239 - +1.6 5,319,239 - +0.0 5,319,239 - +3.6 5,319,255 + -3.2 5,319,263 - -1.6 5,319,269 - +0.3 5,319,274 + +0.6 5,319,296 + -0.1 5,319,324 + +0.7 5,319,332 - +0.2 5,319,332 - +0.0 5,319,347 - +0.9 5,319,366 + +1.0 5,319,402 - -0.2 5,319,425 + +0.6 5,319,433 - -1.0 5,319,450 + -2.8 5,319,489 + +1.3 5,319,495 - -0.2 5,319,497 - +0.6 5,319,548 - -0.4 5,319,629 + -0.7 5,319,634 - -1.0 5,319,637 - +0.0 5,319,639 - -0.5 5,319,656 + -1.9 5,319,664 + -2.9 5,319,664 + -0.6 5,319,664 + +0.7 5,319,664 + -1.0 5,319,664 + +1.1 5,319,664 + +1.0 5,319,664 + -1.4 5,319,664 + +0.1 5,319,672 - -1.2 5,319,672 - +1.1 5,319,672 - +1.1 5,319,672 - -2.6 5,319,672 - -0.9 5,319,672 - -1.8 5,319,672 - -1.6 5,319,672 - -3.5 5,319,672 - -2.2 5,319,672 - -1.0 5,319,672 - +0.0 5,319,675 + +0.6 5,319,675 + +0.2 5,319,675 + -1.1 5,319,675 + -0.5 5,319,675 + -0.2 5,319,675 + -3.2 5,319,675 + -0.4 5,319,675 + +0.1 5,319,683 - -2.5 5,319,683 - +0.0 5,319,683 - -2.3 5,319,683 - +0.8 5,319,683 - +1.2 5,319,683 - +0.3 5,319,683 - -0.7 5,319,700 - -0.8 5,319,742 + BWI76_RS25590 0.13 +0.1 5,319,754 + BWI76_RS25590 0.18 -0.9 5,319,764 + BWI76_RS25590 0.23 -0.2 5,319,764 + BWI76_RS25590 0.23 -1.0 5,319,764 + BWI76_RS25590 0.23 +0.9 5,319,764 + BWI76_RS25590 0.23 +1.9 5,319,772 - BWI76_RS25590 0.27 -0.3 5,319,774 + BWI76_RS25590 0.27 -2.1 5,319,782 - BWI76_RS25590 0.31 +0.6 5,319,812 + BWI76_RS25590 0.45 -1.9 5,319,817 + BWI76_RS25590 0.47 -2.3 5,319,817 + BWI76_RS25590 0.47 +0.5 5,319,826 - BWI76_RS25590 0.51 -4.5 5,319,850 - BWI76_RS25590 0.62 -0.9 5,319,995 + +1.0 5,320,004 - -1.8 5,320,019 - -0.0 5,320,353 - BWI76_RS25600 0.49 +0.3
Or see this region's nucleotide sequence