Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25460 and BWI76_RS25465 overlap by 4 nucleotides BWI76_RS25465 and BWI76_RS25470 are separated by 58 nucleotides BWI76_RS25470 and BWI76_RS25475 are separated by 88 nucleotides
BWI76_RS25460: BWI76_RS25460 - transcriptional regulator, at 5,289,757 to 5,290,686
_RS25460
BWI76_RS25465: BWI76_RS25465 - transcriptional regulator, at 5,290,683 to 5,291,429
_RS25465
BWI76_RS25470: BWI76_RS25470 - metalloprotease TldD, at 5,291,488 to 5,292,933
_RS25470
BWI76_RS25475: BWI76_RS25475 - TIGR02099 family protein, at 5,293,022 to 5,296,819
_RS25475
Position (kb) 5291
5292
5293 Strain fitness (log2 ratio) -2
-1
0
1 at 5290.603 kb on - strand at 5290.656 kb on + strand at 5290.697 kb on - strand at 5290.834 kb on + strand at 5290.966 kb on + strand, within BWI76_RS25465 at 5290.974 kb on - strand, within BWI76_RS25465 at 5290.995 kb on + strand, within BWI76_RS25465 at 5291.042 kb on + strand, within BWI76_RS25465 at 5291.283 kb on - strand, within BWI76_RS25465 at 5291.290 kb on - strand, within BWI76_RS25465 at 5291.348 kb on - strand, within BWI76_RS25465 at 5291.485 kb on + strand at 5291.656 kb on + strand, within BWI76_RS25470 at 5291.663 kb on - strand, within BWI76_RS25470 at 5291.819 kb on - strand, within BWI76_RS25470 at 5291.843 kb on + strand, within BWI76_RS25470 at 5291.918 kb on + strand, within BWI76_RS25470 at 5292.057 kb on + strand, within BWI76_RS25470 at 5292.057 kb on + strand, within BWI76_RS25470 at 5292.065 kb on - strand, within BWI76_RS25470 at 5292.065 kb on - strand, within BWI76_RS25470 at 5292.159 kb on + strand, within BWI76_RS25470 at 5292.159 kb on + strand, within BWI76_RS25470 at 5292.511 kb on - strand, within BWI76_RS25470 at 5292.612 kb on - strand, within BWI76_RS25470 at 5292.671 kb on - strand, within BWI76_RS25470 at 5293.227 kb on + strand at 5293.272 kb on - strand at 5293.291 kb on + strand at 5293.434 kb on - strand, within BWI76_RS25475 at 5293.557 kb on - strand, within BWI76_RS25475 at 5293.562 kb on - strand, within BWI76_RS25475
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,290,603 - +0.2 5,290,656 + +1.0 5,290,697 - -0.0 5,290,834 + -0.6 5,290,966 + BWI76_RS25465 0.38 -1.1 5,290,974 - BWI76_RS25465 0.39 +0.0 5,290,995 + BWI76_RS25465 0.42 +1.2 5,291,042 + BWI76_RS25465 0.48 +0.8 5,291,283 - BWI76_RS25465 0.80 +0.4 5,291,290 - BWI76_RS25465 0.81 -0.0 5,291,348 - BWI76_RS25465 0.89 +0.9 5,291,485 + +0.4 5,291,656 + BWI76_RS25470 0.12 -2.1 5,291,663 - BWI76_RS25470 0.12 -0.8 5,291,819 - BWI76_RS25470 0.23 -1.3 5,291,843 + BWI76_RS25470 0.25 -0.8 5,291,918 + BWI76_RS25470 0.30 +0.7 5,292,057 + BWI76_RS25470 0.39 -0.1 5,292,057 + BWI76_RS25470 0.39 +1.0 5,292,065 - BWI76_RS25470 0.40 +0.0 5,292,065 - BWI76_RS25470 0.40 +0.5 5,292,159 + BWI76_RS25470 0.46 -1.3 5,292,159 + BWI76_RS25470 0.46 -1.8 5,292,511 - BWI76_RS25470 0.71 -1.1 5,292,612 - BWI76_RS25470 0.78 +1.4 5,292,671 - BWI76_RS25470 0.82 -0.4 5,293,227 + -0.2 5,293,272 - -0.1 5,293,291 + +0.3 5,293,434 - BWI76_RS25475 0.11 -1.0 5,293,557 - BWI76_RS25475 0.14 +0.9 5,293,562 - BWI76_RS25475 0.14 -0.1
Or see this region's nucleotide sequence