Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24375 and BWI76_RS24380 are separated by 30 nucleotides BWI76_RS24380 and BWI76_RS24385 overlap by 1 nucleotides BWI76_RS24385 and BWI76_RS24390 are separated by 24 nucleotides BWI76_RS24390 and BWI76_RS24395 overlap by 4 nucleotides
BWI76_RS24375: BWI76_RS24375 - DNA topoisomerase IV subunit B, at 5,080,927 to 5,082,822
_RS24375
BWI76_RS24380: BWI76_RS24380 - esterase YqiA, at 5,082,853 to 5,083,428
_RS24380
BWI76_RS24385: BWI76_RS24385 - phosphodiesterase, at 5,083,428 to 5,084,255
_RS24385
BWI76_RS24390: BWI76_RS24390 - hypothetical protein, at 5,084,280 to 5,084,702
_RS24390
BWI76_RS24395: BWI76_RS24395 - ADP-ribose diphosphatase, at 5,084,699 to 5,085,331
_RS24395
Position (kb) 5083
5084
5085 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5083.137 kb on + strand, within BWI76_RS24380 at 5083.179 kb on + strand, within BWI76_RS24380 at 5083.187 kb on - strand, within BWI76_RS24380 at 5083.298 kb on + strand, within BWI76_RS24380 at 5083.306 kb on - strand at 5083.340 kb on - strand, within BWI76_RS24380 at 5083.427 kb on - strand at 5083.522 kb on - strand, within BWI76_RS24385 at 5083.556 kb on + strand, within BWI76_RS24385 at 5083.578 kb on - strand, within BWI76_RS24385 at 5083.578 kb on - strand, within BWI76_RS24385 at 5083.578 kb on - strand, within BWI76_RS24385 at 5083.658 kb on + strand, within BWI76_RS24385 at 5083.726 kb on - strand, within BWI76_RS24385 at 5083.778 kb on + strand, within BWI76_RS24385 at 5083.849 kb on - strand at 5083.945 kb on + strand, within BWI76_RS24385 at 5084.023 kb on + strand, within BWI76_RS24385 at 5084.183 kb on + strand at 5084.434 kb on - strand, within BWI76_RS24390 at 5084.593 kb on - strand, within BWI76_RS24390 at 5084.767 kb on - strand, within BWI76_RS24395 at 5084.799 kb on + strand, within BWI76_RS24395 at 5084.807 kb on - strand, within BWI76_RS24395 at 5084.953 kb on - strand, within BWI76_RS24395 at 5084.963 kb on - strand at 5084.963 kb on - strand, within BWI76_RS24395 at 5084.971 kb on + strand, within BWI76_RS24395 at 5085.101 kb on - strand, within BWI76_RS24395 at 5085.142 kb on - strand, within BWI76_RS24395 at 5085.195 kb on - strand, within BWI76_RS24395 at 5085.220 kb on + strand, within BWI76_RS24395
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,083,137 + BWI76_RS24380 0.49 +1.0 5,083,179 + BWI76_RS24380 0.57 -0.1 5,083,187 - BWI76_RS24380 0.58 -3.7 5,083,298 + BWI76_RS24380 0.77 +0.1 5,083,306 - +1.0 5,083,340 - BWI76_RS24380 0.85 -1.1 5,083,427 - -0.5 5,083,522 - BWI76_RS24385 0.11 -3.2 5,083,556 + BWI76_RS24385 0.15 -0.0 5,083,578 - BWI76_RS24385 0.18 -3.6 5,083,578 - BWI76_RS24385 0.18 -1.0 5,083,578 - BWI76_RS24385 0.18 -3.0 5,083,658 + BWI76_RS24385 0.28 -2.0 5,083,726 - BWI76_RS24385 0.36 -1.2 5,083,778 + BWI76_RS24385 0.42 -1.8 5,083,849 - +1.0 5,083,945 + BWI76_RS24385 0.62 -1.2 5,084,023 + BWI76_RS24385 0.72 +2.0 5,084,183 + -1.3 5,084,434 - BWI76_RS24390 0.36 +1.2 5,084,593 - BWI76_RS24390 0.74 -0.1 5,084,767 - BWI76_RS24395 0.11 +1.1 5,084,799 + BWI76_RS24395 0.16 -0.9 5,084,807 - BWI76_RS24395 0.17 -1.8 5,084,953 - BWI76_RS24395 0.40 +0.2 5,084,963 - +1.0 5,084,963 - BWI76_RS24395 0.42 -0.3 5,084,971 + BWI76_RS24395 0.43 +1.0 5,085,101 - BWI76_RS24395 0.64 -0.0 5,085,142 - BWI76_RS24395 0.70 -1.1 5,085,195 - BWI76_RS24395 0.78 +0.4 5,085,220 + BWI76_RS24395 0.82 +0.6
Or see this region's nucleotide sequence