Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24065 and BWI76_RS24070 are separated by 90 nucleotides BWI76_RS24070 and BWI76_RS24075 are separated by 20 nucleotides BWI76_RS24075 and BWI76_RS24080 are separated by 176 nucleotides BWI76_RS24080 and BWI76_RS24085 overlap by 1 nucleotides
BWI76_RS24065: BWI76_RS24065 - deoxyribonuclease I, at 5,021,778 to 5,022,485
_RS24065
BWI76_RS24070: BWI76_RS24070 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 5,022,576 to 5,023,307
_RS24070
BWI76_RS24075: BWI76_RS24075 - glutathione synthase, at 5,023,328 to 5,024,275
_RS24075
BWI76_RS24080: BWI76_RS24080 - DUF179 domain-containing protein, at 5,024,452 to 5,025,015
_RS24080
BWI76_RS24085: BWI76_RS24085 - Holliday junction resolvase RuvX, at 5,025,015 to 5,025,431
_RS24085
Position (kb) 5023
5024
5025 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5022.393 kb on + strand, within BWI76_RS24065 at 5022.448 kb on - strand at 5022.678 kb on + strand, within BWI76_RS24070 at 5022.678 kb on + strand, within BWI76_RS24070 at 5022.827 kb on + strand, within BWI76_RS24070 at 5022.891 kb on - strand, within BWI76_RS24070 at 5023.064 kb on + strand, within BWI76_RS24070 at 5023.265 kb on - strand at 5023.310 kb on + strand at 5023.390 kb on - strand at 5023.483 kb on - strand, within BWI76_RS24075 at 5023.757 kb on - strand, within BWI76_RS24075 at 5023.773 kb on - strand, within BWI76_RS24075 at 5023.816 kb on - strand, within BWI76_RS24075 at 5023.821 kb on - strand, within BWI76_RS24075 at 5023.916 kb on + strand, within BWI76_RS24075 at 5024.250 kb on + strand at 5024.258 kb on - strand at 5024.309 kb on + strand at 5024.317 kb on - strand at 5024.521 kb on + strand, within BWI76_RS24080 at 5024.830 kb on + strand, within BWI76_RS24080 at 5024.835 kb on + strand, within BWI76_RS24080 at 5024.971 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 5,022,393 + BWI76_RS24065 0.87 -0.9 5,022,448 - -0.9 5,022,678 + BWI76_RS24070 0.14 +0.5 5,022,678 + BWI76_RS24070 0.14 +0.9 5,022,827 + BWI76_RS24070 0.34 +1.9 5,022,891 - BWI76_RS24070 0.43 +1.5 5,023,064 + BWI76_RS24070 0.67 +0.1 5,023,265 - -0.7 5,023,310 + -1.7 5,023,390 - -3.7 5,023,483 - BWI76_RS24075 0.16 +0.9 5,023,757 - BWI76_RS24075 0.45 -2.3 5,023,773 - BWI76_RS24075 0.47 -0.7 5,023,816 - BWI76_RS24075 0.51 +0.9 5,023,821 - BWI76_RS24075 0.52 -1.9 5,023,916 + BWI76_RS24075 0.62 -4.4 5,024,250 + -0.4 5,024,258 - -0.1 5,024,309 + +0.9 5,024,317 - -0.7 5,024,521 + BWI76_RS24080 0.12 -0.6 5,024,830 + BWI76_RS24080 0.67 -2.1 5,024,835 + BWI76_RS24080 0.68 -2.1 5,024,971 + +0.9
Or see this region's nucleotide sequence