Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23710 and BWI76_RS23715 are separated by 135 nucleotides BWI76_RS23715 and BWI76_RS23720 are separated by 13 nucleotides
BWI76_RS23710: BWI76_RS23710 - 3-keto-2-deoxy-D-ribonyl-CoA thiolase <small>(from data)</small>, at 4,949,048 to 4,950,238
_RS23710
BWI76_RS23715: BWI76_RS23715 - 2-deoxy-D-ribonate transporter 1 <small>(from data)</small>, at 4,950,374 to 4,951,711
_RS23715
BWI76_RS23720: BWI76_RS23720 - calcium-binding protein, at 4,951,725 to 4,952,603
_RS23720
Position (kb) 4950
4951
4952 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4949.429 kb on - strand, within BWI76_RS23710 at 4949.480 kb on + strand, within BWI76_RS23710 at 4949.754 kb on - strand, within BWI76_RS23710 at 4949.876 kb on + strand, within BWI76_RS23710 at 4950.029 kb on + strand, within BWI76_RS23710 at 4950.593 kb on + strand, within BWI76_RS23715 at 4950.593 kb on + strand, within BWI76_RS23715 at 4950.601 kb on - strand, within BWI76_RS23715 at 4950.601 kb on - strand, within BWI76_RS23715 at 4950.640 kb on + strand, within BWI76_RS23715 at 4950.640 kb on + strand, within BWI76_RS23715 at 4950.645 kb on + strand, within BWI76_RS23715 at 4951.044 kb on - strand, within BWI76_RS23715 at 4951.165 kb on - strand, within BWI76_RS23715 at 4951.334 kb on - strand, within BWI76_RS23715 at 4951.437 kb on - strand, within BWI76_RS23715 at 4951.665 kb on + strand at 4951.937 kb on + strand, within BWI76_RS23720 at 4951.963 kb on - strand, within BWI76_RS23720 at 4951.991 kb on - strand, within BWI76_RS23720 at 4952.238 kb on + strand, within BWI76_RS23720 at 4952.333 kb on - strand, within BWI76_RS23720 at 4952.368 kb on - strand, within BWI76_RS23720 at 4952.488 kb on - strand, within BWI76_RS23720 at 4952.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 4,949,429 - BWI76_RS23710 0.32 -0.9 4,949,480 + BWI76_RS23710 0.36 +0.2 4,949,754 - BWI76_RS23710 0.59 +1.0 4,949,876 + BWI76_RS23710 0.70 +2.1 4,950,029 + BWI76_RS23710 0.82 +1.2 4,950,593 + BWI76_RS23715 0.16 -0.3 4,950,593 + BWI76_RS23715 0.16 -1.4 4,950,601 - BWI76_RS23715 0.17 -0.5 4,950,601 - BWI76_RS23715 0.17 -1.5 4,950,640 + BWI76_RS23715 0.20 +4.7 4,950,640 + BWI76_RS23715 0.20 +1.2 4,950,645 + BWI76_RS23715 0.20 -2.6 4,951,044 - BWI76_RS23715 0.50 -0.1 4,951,165 - BWI76_RS23715 0.59 -2.7 4,951,334 - BWI76_RS23715 0.72 +0.3 4,951,437 - BWI76_RS23715 0.79 -1.0 4,951,665 + -0.3 4,951,937 + BWI76_RS23720 0.24 +0.1 4,951,963 - BWI76_RS23720 0.27 -0.1 4,951,991 - BWI76_RS23720 0.30 -0.0 4,952,238 + BWI76_RS23720 0.58 -1.1 4,952,333 - BWI76_RS23720 0.69 +0.4 4,952,368 - BWI76_RS23720 0.73 -0.2 4,952,488 - BWI76_RS23720 0.87 -1.4 4,952,711 - +0.6
Or see this region's nucleotide sequence