Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23450 and BWI76_RS23455 are separated by 96 nucleotides BWI76_RS23455 and BWI76_RS23460 are separated by 110 nucleotides
BWI76_RS23450: BWI76_RS23450 - LysR family transcriptional regulator, at 4,893,121 to 4,893,993
_RS23450
BWI76_RS23455: BWI76_RS23455 - Na(+)-translocating NADH-quinone reductase subunit E, at 4,894,090 to 4,894,578
_RS23455
BWI76_RS23460: BWI76_RS23460 - hypothetical protein, at 4,894,689 to 4,895,918
_RS23460
Position (kb) 4894
4895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4893.116 kb on + strand at 4893.350 kb on + strand, within BWI76_RS23450 at 4893.353 kb on - strand, within BWI76_RS23450 at 4893.393 kb on - strand, within BWI76_RS23450 at 4893.416 kb on - strand, within BWI76_RS23450 at 4893.440 kb on + strand, within BWI76_RS23450 at 4893.440 kb on + strand, within BWI76_RS23450 at 4893.440 kb on + strand, within BWI76_RS23450 at 4893.440 kb on + strand, within BWI76_RS23450 at 4893.448 kb on - strand, within BWI76_RS23450 at 4893.453 kb on - strand at 4893.699 kb on + strand, within BWI76_RS23450 at 4893.714 kb on - strand, within BWI76_RS23450 at 4893.725 kb on - strand at 4893.790 kb on + strand, within BWI76_RS23450 at 4893.790 kb on + strand, within BWI76_RS23450 at 4893.791 kb on + strand, within BWI76_RS23450 at 4893.798 kb on - strand, within BWI76_RS23450 at 4893.798 kb on - strand, within BWI76_RS23450 at 4894.081 kb on + strand at 4894.110 kb on + strand at 4894.206 kb on - strand, within BWI76_RS23455 at 4894.442 kb on + strand, within BWI76_RS23455 at 4894.490 kb on + strand, within BWI76_RS23455 at 4894.806 kb on - strand at 4894.989 kb on + strand, within BWI76_RS23460 at 4894.994 kb on + strand, within BWI76_RS23460 at 4895.019 kb on - strand, within BWI76_RS23460 at 4895.136 kb on - strand, within BWI76_RS23460 at 4895.223 kb on + strand, within BWI76_RS23460
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 4,893,116 + +0.2 4,893,350 + BWI76_RS23450 0.26 -1.7 4,893,353 - BWI76_RS23450 0.27 +0.9 4,893,393 - BWI76_RS23450 0.31 +0.9 4,893,416 - BWI76_RS23450 0.34 +1.0 4,893,440 + BWI76_RS23450 0.37 +0.7 4,893,440 + BWI76_RS23450 0.37 +0.2 4,893,440 + BWI76_RS23450 0.37 -0.6 4,893,440 + BWI76_RS23450 0.37 +1.9 4,893,448 - BWI76_RS23450 0.37 +0.2 4,893,453 - +0.9 4,893,699 + BWI76_RS23450 0.66 +2.2 4,893,714 - BWI76_RS23450 0.68 +1.7 4,893,725 - -2.7 4,893,790 + BWI76_RS23450 0.77 +0.0 4,893,790 + BWI76_RS23450 0.77 -2.6 4,893,791 + BWI76_RS23450 0.77 +1.0 4,893,798 - BWI76_RS23450 0.78 +1.2 4,893,798 - BWI76_RS23450 0.78 -0.2 4,894,081 + -0.7 4,894,110 + -1.2 4,894,206 - BWI76_RS23455 0.24 +3.4 4,894,442 + BWI76_RS23455 0.72 -2.8 4,894,490 + BWI76_RS23455 0.82 -0.0 4,894,806 - +0.6 4,894,989 + BWI76_RS23460 0.24 +0.3 4,894,994 + BWI76_RS23460 0.25 -0.2 4,895,019 - BWI76_RS23460 0.27 -0.1 4,895,136 - BWI76_RS23460 0.36 +1.8 4,895,223 + BWI76_RS23460 0.43 -0.1
Or see this region's nucleotide sequence