Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21535

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21530 and BWI76_RS21535 are separated by 164 nucleotidesBWI76_RS21535 and BWI76_RS21540 are separated by 18 nucleotides BWI76_RS21530: BWI76_RS21530 - signal recognition particle protein, at 4,507,675 to 4,509,042 _RS21530 BWI76_RS21535: BWI76_RS21535 - inner membrane protein YpjD, at 4,509,207 to 4,509,998 _RS21535 BWI76_RS21540: BWI76_RS21540 - membrane protein, at 4,510,017 to 4,511,306 _RS21540 Position (kb) 4509 4510Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4509.113 kb on - strandat 4509.113 kb on - strandat 4509.145 kb on + strandat 4509.160 kb on + strandat 4509.160 kb on + strandat 4509.168 kb on - strandat 4509.168 kb on - strandat 4509.232 kb on - strandat 4509.500 kb on - strand, within BWI76_RS21535at 4509.529 kb on + strand, within BWI76_RS21535at 4509.615 kb on + strand, within BWI76_RS21535at 4509.633 kb on - strand, within BWI76_RS21535at 4509.754 kb on + strand, within BWI76_RS21535at 4509.777 kb on - strand, within BWI76_RS21535at 4509.777 kb on - strand, within BWI76_RS21535at 4509.799 kb on - strand, within BWI76_RS21535at 4509.930 kb on - strandat 4509.964 kb on - strandat 4510.036 kb on - strandat 4510.073 kb on - strandat 4510.229 kb on - strand, within BWI76_RS21540at 4510.277 kb on + strand, within BWI76_RS21540at 4510.602 kb on + strand, within BWI76_RS21540at 4510.833 kb on - strand, within BWI76_RS21540at 4510.961 kb on + strand, within BWI76_RS21540at 4510.969 kb on - strand, within BWI76_RS21540

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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4,509,113 - -1.7
4,509,113 - -0.7
4,509,145 + +1.0
4,509,160 + +2.1
4,509,160 + +3.2
4,509,168 - +3.3
4,509,168 - -0.6
4,509,232 - +1.9
4,509,500 - BWI76_RS21535 0.37 -0.0
4,509,529 + BWI76_RS21535 0.41 -0.9
4,509,615 + BWI76_RS21535 0.52 +0.6
4,509,633 - BWI76_RS21535 0.54 +2.7
4,509,754 + BWI76_RS21535 0.69 -0.6
4,509,777 - BWI76_RS21535 0.72 +3.4
4,509,777 - BWI76_RS21535 0.72 -1.8
4,509,799 - BWI76_RS21535 0.75 +1.7
4,509,930 - -1.6
4,509,964 - +1.5
4,510,036 - +4.6
4,510,073 - +2.5
4,510,229 - BWI76_RS21540 0.16 +2.5
4,510,277 + BWI76_RS21540 0.20 +3.2
4,510,602 + BWI76_RS21540 0.45 +4.0
4,510,833 - BWI76_RS21540 0.63 +2.8
4,510,961 + BWI76_RS21540 0.73 +3.6
4,510,969 - BWI76_RS21540 0.74 +3.0

Or see this region's nucleotide sequence