Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21360 and BWI76_RS21365 overlap by 16 nucleotides BWI76_RS21365 and BWI76_RS21370 are separated by 132 nucleotides BWI76_RS21370 and BWI76_RS21375 are separated by 44 nucleotides BWI76_RS21375 and BWI76_RS21380 are separated by 311 nucleotides
BWI76_RS21360: BWI76_RS21360 - L-aspartate oxidase, at 4,471,092 to 4,472,711
_RS21360
BWI76_RS21365: BWI76_RS21365 - tRNA (adenosine(37)-N6)-methyltransferase TrmM, at 4,472,696 to 4,473,436
_RS21365
BWI76_RS21370: BWI76_RS21370 - ATP-dependent RNA helicase SrmB, at 4,473,569 to 4,474,900
_RS21370
BWI76_RS21375: BWI76_RS21375 - autonomous glycyl radical cofactor GrcA, at 4,474,945 to 4,475,328
_RS21375
BWI76_RS21380: BWI76_RS21380 - uracil-DNA glycosylase, at 4,475,640 to 4,476,329
_RS21380
Position (kb) 4473
4474
4475 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4472.578 kb on + strand at 4472.625 kb on + strand at 4472.647 kb on + strand at 4472.655 kb on - strand at 4472.760 kb on - strand at 4473.262 kb on - strand, within BWI76_RS21365 at 4473.297 kb on + strand, within BWI76_RS21365 at 4473.297 kb on + strand, within BWI76_RS21365 at 4473.297 kb on + strand, within BWI76_RS21365 at 4473.305 kb on - strand, within BWI76_RS21365 at 4473.395 kb on + strand at 4473.469 kb on + strand at 4473.476 kb on + strand at 4473.477 kb on - strand at 4473.804 kb on + strand, within BWI76_RS21370 at 4473.812 kb on - strand, within BWI76_RS21370 at 4475.120 kb on - strand, within BWI76_RS21375 at 4475.276 kb on - strand, within BWI76_RS21375 at 4475.409 kb on - strand at 4475.499 kb on + strand at 4475.796 kb on - strand, within BWI76_RS21380 at 4475.819 kb on - strand, within BWI76_RS21380
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 4,472,578 + -1.5 4,472,625 + -3.5 4,472,647 + -0.8 4,472,655 - -1.6 4,472,760 - +0.5 4,473,262 - BWI76_RS21365 0.76 +0.4 4,473,297 + BWI76_RS21365 0.81 -1.2 4,473,297 + BWI76_RS21365 0.81 +1.4 4,473,297 + BWI76_RS21365 0.81 +1.5 4,473,305 - BWI76_RS21365 0.82 -1.1 4,473,395 + +1.4 4,473,469 + -1.0 4,473,476 + -0.5 4,473,477 - +0.0 4,473,804 + BWI76_RS21370 0.18 -2.9 4,473,812 - BWI76_RS21370 0.18 -0.6 4,475,120 - BWI76_RS21375 0.46 +1.0 4,475,276 - BWI76_RS21375 0.86 +1.7 4,475,409 - -0.1 4,475,499 + -0.6 4,475,796 - BWI76_RS21380 0.23 +0.1 4,475,819 - BWI76_RS21380 0.26 -0.3
Or see this region's nucleotide sequence